Wall clock time and date at job start Sun Mar 29 2020 21:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.90464 * 2 1 4 4 C 1.54903 * 110.99106 * 236.13141 * 2 1 3 5 5 N 1.47840 * 104.79755 * 204.83958 * 4 2 1 6 6 C 1.46900 * 111.00176 * 146.36587 * 5 4 2 7 7 C 1.53002 * 109.47341 * 66.64038 * 6 5 4 8 8 C 1.50694 * 109.47393 * 180.02562 * 7 6 5 9 9 H 1.08008 * 120.00258 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00128 * 180.27430 * 8 7 6 11 11 N 1.31516 * 120.00181 * 359.72319 * 10 8 7 12 12 Si 1.86803 * 119.99988 * 179.72661 * 10 8 7 13 13 H 1.48500 * 109.47268 * 90.00311 * 12 10 8 14 14 H 1.48503 * 109.46915 * 209.99834 * 12 10 8 15 15 H 1.48497 * 109.47047 * 329.99887 * 12 10 8 16 16 C 1.47440 * 108.56970 * 24.09516 * 5 4 2 17 17 C 1.53004 * 109.88880 * 118.41468 * 16 5 4 18 18 C 1.52996 * 109.89370 * 239.60522 * 16 5 4 19 19 C 1.54316 * 107.23118 * 359.01502 * 16 5 4 20 20 H 1.09007 * 109.47473 * 182.41486 * 1 2 3 21 21 H 1.09005 * 109.47409 * 302.41152 * 1 2 3 22 22 H 1.09002 * 109.47082 * 62.41469 * 1 2 3 23 23 H 1.09001 * 110.37250 * 86.01118 * 4 2 1 24 24 H 1.08997 * 110.46961 * 323.71587 * 4 2 1 25 25 H 1.08996 * 109.47453 * 306.64018 * 6 5 4 26 26 H 1.09007 * 109.47477 * 186.63851 * 6 5 4 27 27 H 1.09003 * 109.47161 * 60.00198 * 7 6 5 28 28 H 1.09007 * 109.46682 * 300.00300 * 7 6 5 29 29 H 0.96999 * 120.00258 * 180.02562 * 11 10 8 30 30 H 1.08998 * 109.46949 * 64.72686 * 17 16 5 31 31 H 1.09000 * 109.47272 * 184.72619 * 17 16 5 32 32 H 1.09001 * 109.47311 * 304.72947 * 17 16 5 33 33 H 1.08999 * 109.46936 * 59.99549 * 18 16 5 34 34 H 1.08997 * 109.47440 * 179.97438 * 18 16 5 35 35 H 1.09002 * 109.47055 * 300.00385 * 18 16 5 36 36 H 1.09001 * 110.70512 * 219.33184 * 19 16 5 37 37 H 1.08998 * 110.70861 * 96.09672 * 19 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9189 1.0182 0.0000 4 6 2.0848 -0.8060 -1.2008 5 7 3.4312 -1.2420 -0.7731 6 6 3.7611 -2.5589 -1.3343 7 6 3.8948 -2.4466 -2.8543 8 6 4.2326 -3.7976 -3.4301 9 1 4.3407 -4.6512 -2.7773 10 6 4.4087 -3.9430 -4.7899 11 7 4.2765 -2.9038 -5.5850 12 14 4.8350 -5.6162 -5.5028 13 1 3.5850 -6.3446 -5.8378 14 1 5.6485 -5.4377 -6.7322 15 1 5.6103 -6.3964 -4.5051 16 6 3.4692 -1.2711 0.7005 17 6 3.7484 -2.6950 1.1860 18 6 4.5540 -0.3213 1.2122 19 6 2.0857 -0.8072 1.2027 20 1 -0.3634 -1.0268 0.0433 21 1 -0.3634 0.5508 0.8676 22 1 -0.3633 0.4759 -0.9109 23 1 2.1544 -0.1712 -2.0842 24 1 1.4529 -1.6704 -1.4044 25 1 2.9687 -3.2666 -1.0906 26 1 4.7031 -2.9085 -0.9116 27 1 4.6872 -1.7389 -3.0981 28 1 2.9527 -2.0971 -3.2770 29 1 4.4001 -3.0062 -6.5416 30 1 4.7447 -2.9994 0.8652 31 1 3.6920 -2.7255 2.2741 32 1 3.0076 -3.3745 0.7645 33 1 4.3359 0.6930 0.8780 34 1 4.5759 -0.3478 2.3016 35 1 5.5229 -0.6321 0.8213 36 1 2.1884 -0.1693 2.0805 37 1 1.4475 -1.6637 1.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306455246.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:49 Heat of formation + Delta-G solvation = -34.121956 kcal Electronic energy + Delta-G solvation = -14728.393166 eV Core-core repulsion = 12504.026513 eV Total energy + Delta-G solvation = -2224.366654 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87537 -35.86392 -34.58677 -33.65717 -30.66717 -28.60901 -27.62192 -26.35103 -25.33772 -22.37868 -21.18164 -19.61019 -18.45531 -16.93134 -16.43368 -16.27539 -15.84971 -14.91737 -14.70350 -14.33185 -14.12198 -13.85638 -13.56675 -13.36582 -12.98850 -12.90441 -12.77104 -12.55122 -12.51945 -12.35192 -12.10387 -11.68201 -11.55390 -11.43079 -11.31325 -11.19795 -11.13424 -10.56454 -9.09829 -8.21224 -6.33290 1.38092 1.40235 1.51444 2.38963 3.10851 3.11641 3.67783 3.70662 3.98001 4.23099 4.31390 4.41614 4.48720 4.57852 4.63707 4.69938 4.73903 4.86168 4.88033 4.96948 4.99011 5.04363 5.09719 5.10621 5.19879 5.24791 5.32779 5.44773 5.45748 5.57400 5.67036 5.79932 6.11871 6.35900 6.39914 6.84201 7.35976 8.91076 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039971 B = 0.007469 C = 0.006872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.340819 B = 3747.746661 C = 4073.473714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.085 0.915 4 C 0.049 3.951 5 N -0.539 5.539 6 C 0.080 3.920 7 C 0.037 3.963 8 C -0.546 4.546 9 H 0.059 0.941 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.968 3.032 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.262 1.262 16 C 0.080 3.920 17 C -0.158 4.158 18 C -0.119 4.119 19 C -0.117 4.117 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.028 0.972 25 H 0.020 0.980 26 H 0.063 0.937 27 H -0.013 1.013 28 H -0.013 1.013 29 H 0.264 0.736 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.096 0.904 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 4.117 14.989 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.079 4.079 5 N -0.263 5.263 6 C -0.047 4.047 7 C 0.000 4.000 8 C -0.584 4.584 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.186 1.186 16 C -0.009 4.009 17 C -0.216 4.216 18 C -0.177 4.177 19 C -0.156 4.156 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.006 0.994 28 H 0.006 0.994 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.635 4.510 14.635 16.000 hybrid contribution -0.222 -1.318 -0.882 1.601 sum -4.857 3.192 13.753 14.931 Atomic orbital electron populations 1.21680 0.93123 1.01925 1.02588 1.22275 0.96538 0.99151 0.93432 0.89683 1.23019 0.88623 0.97781 0.98432 1.63561 1.27356 1.27308 1.08078 1.22132 0.98636 0.88498 0.95482 1.18906 0.94584 0.95234 0.91296 1.21630 1.48044 0.95791 0.92932 0.92251 1.25998 0.95064 1.01027 0.97653 1.70122 1.50714 1.31998 1.04365 0.85414 0.78508 0.79015 0.77904 1.19669 1.20564 1.18646 1.21975 0.96691 0.95683 0.86529 1.22304 1.01342 0.95847 1.02060 1.21697 0.97023 0.98522 1.00481 1.22908 0.94410 0.99926 0.98313 0.93130 0.90393 0.92594 0.92917 0.95319 0.96233 0.91841 0.99425 0.99427 0.92747 0.93008 0.90026 0.93620 0.92727 0.90301 0.94098 0.88569 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.29 71.98 0.67 -2.20 16 2 C -0.09 -2.45 3.63 -9.41 -0.03 -2.49 16 3 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 4 C 0.05 1.78 5.12 86.77 0.44 2.23 16 5 N -0.54 -20.72 4.81 -836.53 -4.02 -24.74 16 6 C 0.08 3.61 3.61 86.30 0.31 3.92 16 7 C 0.04 2.10 4.98 29.85 0.15 2.25 16 8 C -0.55 -32.39 9.11 25.60 0.23 -32.16 16 9 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 10 C 0.00 0.03 5.46 84.65 0.46 0.49 16 11 N -0.93 -58.61 13.29 21.45 0.28 -58.32 16 12 Si 0.97 45.32 29.54 68.60 2.03 47.35 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 16 C 0.08 2.33 1.15 3.87 0.00 2.34 16 17 C -0.16 -4.39 7.15 71.98 0.51 -3.87 16 18 C -0.12 -3.06 8.71 71.98 0.63 -2.43 16 19 C -0.12 -2.76 5.48 31.78 0.17 -2.58 16 20 H 0.05 1.10 8.11 -2.38 -0.02 1.08 16 21 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.03 1.11 7.56 -2.39 -0.02 1.09 16 25 H 0.02 0.88 6.65 -2.39 -0.02 0.86 16 26 H 0.06 2.82 6.33 -2.38 -0.02 2.81 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H -0.01 -0.77 7.40 -2.38 -0.02 -0.79 16 29 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 30 H 0.05 1.56 6.68 -2.39 -0.02 1.55 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.38 6.64 -2.39 -0.02 1.36 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.76 7.83 -2.39 -0.02 1.74 16 37 H 0.07 1.58 7.72 -2.39 -0.02 1.57 16 Total: -1.00 -66.74 286.91 2.84 -63.90 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.00 Total: 6.32 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.55 Total: -34.50 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -3.74 Total: -83.06 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -66.74 2.84 -63.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306455246.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.776 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds