Wall clock time and date at job start Sun Mar 29 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.65442 * 2 1 4 4 N 1.47306 * 110.60312 * 122.91546 * 2 1 3 5 5 C 1.34527 * 106.62063 * 118.30179 * 4 2 1 6 6 O 1.21541 * 123.77005 * 180.20633 * 5 4 2 7 7 N 1.33786 * 112.45596 * 0.38758 * 5 4 2 8 8 C 1.46499 * 124.17708 * 179.86355 * 7 5 4 9 9 C 1.53004 * 109.47198 * 269.69577 * 8 7 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.34769 * 111.64911 * 359.59301 * 7 5 4 19 19 O 1.21229 * 127.16399 * 180.27127 * 18 7 5 20 20 H 1.09005 * 109.46890 * 182.91696 * 1 2 3 21 21 H 1.09002 * 109.46393 * 302.90924 * 1 2 3 22 22 H 1.08993 * 109.47337 * 62.91095 * 1 2 3 23 23 H 0.97001 * 126.68774 * 298.55947 * 4 2 1 24 24 H 1.09000 * 109.47602 * 149.69524 * 8 7 5 25 25 H 1.08998 * 109.47492 * 29.69513 * 8 7 5 26 26 H 1.08994 * 109.47074 * 60.00190 * 9 8 7 27 27 H 1.08998 * 109.47285 * 300.00026 * 9 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 7 2.0484 -0.7493 1.1575 5 6 2.7559 -1.7809 0.6626 6 8 3.3206 -2.6061 1.3535 7 7 2.7716 -1.7948 -0.6751 8 6 3.4674 -2.8022 -1.4796 9 6 4.8962 -2.3325 -1.7606 10 6 5.6122 -3.3691 -2.5876 11 1 5.0993 -4.2723 -2.8835 12 6 6.9220 -3.1645 -2.9663 13 7 7.5467 -2.0649 -2.6055 14 14 7.8094 -4.4490 -3.9921 15 1 9.1961 -3.9932 -4.2646 16 1 7.8472 -5.7349 -3.2503 17 1 7.0899 -4.6397 -5.2771 18 6 2.0633 -0.7709 -1.1913 19 8 1.8884 -0.5193 -2.3642 20 1 -0.3633 -1.0264 0.0523 21 1 -0.3632 0.5584 0.8628 22 1 -0.3633 0.4679 -0.9149 23 1 1.9042 -0.5416 2.0940 24 1 2.9391 -2.9426 -2.4226 25 1 3.4957 -3.7459 -0.9350 26 1 5.4246 -2.1923 -0.8176 27 1 4.8680 -1.3888 -2.3052 28 1 7.0858 -1.3976 -2.0732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306473819.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:47 Heat of formation + Delta-G solvation = -57.798166 kcal Electronic energy + Delta-G solvation = -14122.593306 eV Core-core repulsion = 11560.107875 eV Total energy + Delta-G solvation = -2562.485431 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12244 -38.30178 -36.11076 -35.31455 -33.24915 -30.61433 -29.70834 -25.38202 -24.24247 -22.41407 -21.71499 -19.97839 -17.86119 -17.13144 -16.54640 -16.00384 -15.36711 -15.09005 -14.43127 -13.86912 -13.71464 -13.25678 -13.12766 -12.68977 -12.48874 -12.22396 -11.85566 -10.85903 -10.61615 -10.58861 -10.27148 -10.07914 -9.87860 -9.48902 -9.12960 -8.61842 -8.34769 -6.39357 -4.09235 1.84187 2.52246 3.25778 3.31572 3.45539 3.47988 3.66286 4.07108 4.55176 4.59826 4.76243 5.25585 5.39204 5.40761 5.46307 5.75089 5.94418 6.04564 6.17624 6.50309 6.85270 7.22596 7.28219 7.50350 7.63393 8.09124 8.36806 8.41644 8.82512 9.63596 11.01648 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.052034 B = 0.007639 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.979751 B = 3664.675707 C = 3900.565866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.089 3.911 3 H 0.124 0.876 4 N -0.733 5.733 5 C 0.700 3.300 6 O -0.540 6.540 7 N -0.570 5.570 8 C 0.127 3.873 9 C -0.001 4.001 10 C -0.602 4.602 11 H 0.053 0.947 12 C 0.018 3.982 13 N -0.908 5.908 14 Si 1.073 2.927 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.287 1.287 18 C 0.520 3.480 19 O -0.469 6.469 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.083 0.917 23 H 0.435 0.565 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.962 4.836 6.262 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 H 0.142 0.858 4 N -0.398 5.398 5 C 0.400 3.600 6 O -0.413 6.413 7 N -0.315 5.315 8 C 0.008 3.992 9 C -0.039 4.039 10 C -0.641 4.641 11 H 0.072 0.928 12 C -0.187 4.187 13 N -0.544 5.544 14 Si 0.900 3.100 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.213 1.213 18 C 0.306 3.694 19 O -0.338 6.338 20 H 0.085 0.915 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.279 0.721 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.240 4.083 5.161 13.897 hybrid contribution -1.525 0.554 1.222 2.031 sum -13.765 4.637 6.383 15.865 Atomic orbital electron populations 1.21943 0.91092 1.03672 1.04017 1.22063 0.97254 0.98129 0.84612 0.85836 1.45587 1.56080 1.29310 1.08849 1.15963 0.79575 0.82242 0.82183 1.91005 1.48124 1.41152 1.61035 1.46752 1.48248 1.28885 1.07656 1.22040 0.94967 0.88869 0.93364 1.19537 0.89725 0.97573 0.97045 1.21830 0.99933 1.05715 1.36628 0.92843 1.25896 0.95004 1.00131 0.97636 1.70780 1.39920 1.08446 1.35254 0.83494 0.76137 0.74574 0.75753 1.20717 1.21295 1.21315 1.20792 0.77715 0.80988 0.89858 1.90788 1.57360 1.68985 1.16710 0.91520 0.90590 0.89857 0.72099 0.89716 0.89524 0.96678 0.96969 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.63 37.16 0.36 -0.82 15 2 C 0.09 0.97 4.32 -68.20 -0.29 0.67 15 3 H 0.12 1.08 8.14 -51.93 -0.42 0.66 15 4 N -0.73 -8.75 6.24 -59.19 -0.37 -9.12 15 5 C 0.70 12.41 8.62 -88.02 -0.76 11.66 15 6 O -0.54 -11.63 17.48 5.33 0.09 -11.53 15 7 N -0.57 -10.77 2.60 -120.73 -0.31 -11.08 15 8 C 0.13 2.79 5.64 -4.04 -0.02 2.77 15 9 C 0.00 -0.03 4.61 -27.88 -0.13 -0.16 15 10 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 15 11 H 0.05 1.50 7.74 -52.49 -0.41 1.09 15 12 C 0.02 0.52 5.46 -17.82 -0.10 0.42 15 13 N -0.91 -28.56 13.65 55.43 0.76 -27.81 15 14 Si 1.07 25.71 29.90 -169.99 -5.08 20.62 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 18 C 0.52 8.64 7.65 -10.55 -0.08 8.56 15 19 O -0.47 -9.06 17.76 5.60 0.10 -8.97 15 20 H 0.07 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 15 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.44 3.78 8.96 -40.82 -0.37 3.41 15 24 H 0.08 1.81 8.00 -51.93 -0.42 1.39 15 25 H 0.09 1.90 7.85 -51.93 -0.41 1.49 15 26 H 0.01 0.43 8.01 -51.93 -0.42 0.02 15 27 H 0.01 0.34 8.01 -51.93 -0.42 -0.07 15 28 H 0.27 8.47 7.22 -40.82 -0.29 8.17 15 LS Contribution 252.37 15.07 3.80 3.80 Total: -1.00 -35.35 252.37 -5.56 -40.92 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -3.21 Total: -2.08 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.34 Total: 5.24 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.07 Total: -48.00 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: 0.19 Total: -20.50 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.35 -5.56 -40.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306473819.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.881 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds