Wall clock time and date at job start Sun Mar 29 2020 22:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.65442 * 2 1 4 4 N 1.47306 * 110.60312 * 122.91546 * 2 1 3 5 5 C 1.34527 * 106.62063 * 118.30179 * 4 2 1 6 6 O 1.21541 * 123.77005 * 180.20633 * 5 4 2 7 7 N 1.33786 * 112.45596 * 0.38758 * 5 4 2 8 8 C 1.46499 * 124.17708 * 179.86355 * 7 5 4 9 9 C 1.53004 * 109.47198 * 269.69577 * 8 7 5 10 10 C 1.50700 * 109.47208 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.34769 * 111.64911 * 359.59301 * 7 5 4 19 19 O 1.21229 * 127.16399 * 180.27127 * 18 7 5 20 20 H 1.09005 * 109.46890 * 182.91696 * 1 2 3 21 21 H 1.09002 * 109.46393 * 302.90924 * 1 2 3 22 22 H 1.08993 * 109.47337 * 62.91095 * 1 2 3 23 23 H 0.97001 * 126.68774 * 298.55947 * 4 2 1 24 24 H 1.09000 * 109.47602 * 149.69524 * 8 7 5 25 25 H 1.08998 * 109.47492 * 29.69513 * 8 7 5 26 26 H 1.08994 * 109.47074 * 60.00190 * 9 8 7 27 27 H 1.08998 * 109.47285 * 300.00026 * 9 8 7 28 28 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 7 2.0484 -0.7493 1.1575 5 6 2.7559 -1.7809 0.6626 6 8 3.3206 -2.6061 1.3535 7 7 2.7716 -1.7948 -0.6751 8 6 3.4674 -2.8022 -1.4796 9 6 4.8962 -2.3325 -1.7606 10 6 5.6122 -3.3691 -2.5876 11 1 5.0993 -4.2723 -2.8835 12 6 6.9220 -3.1645 -2.9663 13 7 7.5467 -2.0649 -2.6055 14 14 7.8094 -4.4490 -3.9921 15 1 9.1961 -3.9932 -4.2646 16 1 7.8472 -5.7349 -3.2503 17 1 7.0899 -4.6397 -5.2771 18 6 2.0633 -0.7709 -1.1913 19 8 1.8884 -0.5193 -2.3642 20 1 -0.3633 -1.0264 0.0523 21 1 -0.3632 0.5584 0.8628 22 1 -0.3633 0.4679 -0.9149 23 1 1.9042 -0.5416 2.0940 24 1 2.9391 -2.9426 -2.4226 25 1 3.4957 -3.7459 -0.9350 26 1 5.4246 -2.1923 -0.8176 27 1 4.8680 -1.3888 -2.3052 28 1 7.0858 -1.3976 -2.0732 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306473819.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:47 Heat of formation + Delta-G solvation = -85.077985 kcal Electronic energy + Delta-G solvation = -14123.776247 eV Core-core repulsion = 11560.107875 eV Total energy + Delta-G solvation = -2563.668373 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.46414 -39.73634 -37.45083 -37.01964 -35.25307 -31.88968 -31.31056 -27.14910 -25.65967 -24.23604 -23.12290 -21.44471 -19.29843 -18.98448 -18.08127 -17.42007 -16.68607 -16.56377 -15.68537 -15.60516 -15.27482 -15.13125 -14.79230 -14.16200 -13.85619 -13.39637 -12.93390 -12.77459 -12.63852 -12.21406 -12.03979 -11.92554 -11.29183 -11.03586 -10.74275 -10.61681 -10.48442 -8.78345 -6.49799 0.52269 1.17052 1.52460 1.61755 1.80834 1.89257 2.17733 2.54807 2.90013 3.09191 3.67987 3.91417 4.05836 4.24251 4.33473 4.45545 4.53072 4.75909 4.80341 5.08428 5.15208 5.17830 5.76887 5.81647 6.05547 6.06055 6.32703 6.43051 7.05594 7.33897 8.62538 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.052034 B = 0.007639 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.979751 B = 3664.675707 C = 3900.565866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.104 3.896 3 H 0.160 0.840 4 N -0.700 5.700 5 C 0.693 3.307 6 O -0.586 6.586 7 N -0.584 5.584 8 C 0.141 3.859 9 C 0.008 3.992 10 C -0.621 4.621 11 H 0.063 0.937 12 C -0.037 4.037 13 N -0.933 5.933 14 Si 1.124 2.876 15 H -0.282 1.282 16 H -0.266 1.266 17 H -0.264 1.264 18 C 0.509 3.491 19 O -0.502 6.502 20 H 0.058 0.942 21 H 0.114 0.886 22 H 0.089 0.911 23 H 0.455 0.545 24 H 0.090 0.910 25 H 0.084 0.916 26 H -0.014 1.014 27 H -0.012 1.012 28 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.435 5.164 6.574 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.004 4.004 3 H 0.178 0.822 4 N -0.367 5.367 5 C 0.394 3.606 6 O -0.463 6.463 7 N -0.329 5.329 8 C 0.020 3.980 9 C -0.030 4.030 10 C -0.659 4.659 11 H 0.081 0.919 12 C -0.235 4.235 13 N -0.569 5.569 14 Si 0.944 3.056 15 H -0.208 1.208 16 H -0.191 1.191 17 H -0.189 1.189 18 C 0.298 3.702 19 O -0.374 6.374 20 H 0.077 0.923 21 H 0.133 0.867 22 H 0.108 0.892 23 H 0.303 0.697 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.004 0.996 27 H 0.006 0.994 28 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.789 4.471 5.520 15.511 hybrid contribution -1.125 0.523 1.145 1.688 sum -14.914 4.994 6.665 17.082 Atomic orbital electron populations 1.21996 0.87785 1.04054 1.06140 1.22319 0.99357 0.98006 0.80668 0.82244 1.45452 1.53939 1.27083 1.10218 1.16128 0.79912 0.83027 0.81520 1.90971 1.50354 1.43263 1.61725 1.46745 1.48577 1.29205 1.08333 1.21539 0.92567 0.89633 0.94289 1.19353 0.92515 0.96237 0.94876 1.22301 1.00574 1.06432 1.36594 0.91887 1.27629 0.96421 1.01241 0.98185 1.70926 1.40160 1.09339 1.36501 0.82871 0.74975 0.72579 0.75224 1.20781 1.19119 1.18922 1.21836 0.76771 0.80502 0.91060 1.90765 1.58402 1.69602 1.18582 0.92275 0.86732 0.89221 0.69738 0.89201 0.89735 0.99605 0.99357 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.63 71.98 0.69 -0.95 15 2 C 0.10 1.94 4.32 44.38 0.19 2.13 15 3 H 0.16 2.06 8.14 -2.39 -0.02 2.04 15 4 N -0.70 -14.89 6.24 -459.61 -2.87 -17.76 15 5 C 0.69 24.27 8.62 179.44 1.55 25.82 15 6 O -0.59 -25.57 17.48 -3.85 -0.07 -25.63 15 7 N -0.58 -22.12 2.60 -773.12 -2.01 -24.13 15 8 C 0.14 6.36 5.64 86.38 0.49 6.85 15 9 C 0.01 0.45 4.61 29.85 0.14 0.59 15 10 C -0.62 -36.83 9.11 25.60 0.23 -36.59 15 11 H 0.06 3.54 7.74 -2.91 -0.02 3.51 15 12 C -0.04 -2.24 5.46 84.65 0.46 -1.78 15 13 N -0.93 -60.07 13.65 21.45 0.29 -59.77 15 14 Si 1.12 51.23 29.90 68.60 2.05 53.28 15 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 15 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 17 H -0.26 -11.04 7.11 99.48 0.71 -10.34 15 18 C 0.51 16.46 7.65 87.94 0.67 17.13 15 19 O -0.50 -19.29 17.76 -2.87 -0.05 -19.34 15 20 H 0.06 0.82 8.14 -2.38 -0.02 0.80 15 21 H 0.11 0.55 8.14 -2.39 -0.02 0.53 15 22 H 0.09 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.45 6.32 8.96 -92.71 -0.83 5.49 15 24 H 0.09 3.91 8.00 -2.39 -0.02 3.89 15 25 H 0.08 3.81 7.85 -2.39 -0.02 3.79 15 26 H -0.01 -0.88 8.01 -2.39 -0.02 -0.90 15 27 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 15 28 H 0.25 16.59 7.22 -92.70 -0.67 15.92 15 Total: -1.00 -79.97 252.37 2.21 -77.75 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.44 Total: 2.41 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: 4.43 Total: 13.19 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -4.59 Total: -101.67 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -0.12 Total: -44.98 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.28 kcal Total: -79.97 2.21 -77.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306473819.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.324 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds