Wall clock time and date at job start Sun Mar 29 2020 21:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38416 * 119.99842 * 2 1 4 4 F 1.35103 * 120.03400 * 0.02653 * 3 2 1 5 5 C 1.38649 * 119.92960 * 180.29685 * 3 2 1 6 6 F 1.35104 * 120.03422 * 179.72150 * 5 3 2 7 7 C 1.38402 * 119.92821 * 359.45370 * 5 3 2 8 8 C 1.38216 * 120.00469 * 0.27365 * 7 5 3 9 9 C 1.38206 * 120.00572 * 179.75124 * 2 1 3 10 10 C 1.50703 * 119.96157 * 359.95031 * 9 2 1 11 11 C 1.50698 * 109.47155 * 85.02577 * 10 9 2 12 12 H 1.08004 * 119.99954 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00030 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99691 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 120.00207 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46952 * 89.99453 * 15 13 11 17 17 H 1.48491 * 109.47371 * 209.99792 * 15 13 11 18 18 H 1.48502 * 109.46797 * 330.00208 * 15 13 11 19 19 H 1.09003 * 109.47166 * 270.24927 * 1 2 3 20 20 H 1.08995 * 109.47382 * 30.25285 * 1 2 3 21 21 H 1.08998 * 109.46825 * 150.25367 * 1 2 3 22 22 H 1.08005 * 120.00246 * 180.25095 * 7 5 3 23 23 H 1.07997 * 119.97108 * 180.02562 * 8 7 5 24 24 H 1.09007 * 109.46783 * 205.02765 * 10 9 2 25 25 H 1.09000 * 109.47400 * 325.02265 * 10 9 2 26 26 H 0.96999 * 119.99417 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1987 0.0000 4 9 1.5242 2.3691 0.0005 5 6 3.5855 1.1971 -0.0062 6 9 4.2631 2.3659 -0.0119 7 6 4.2746 -0.0032 -0.0010 8 6 3.5807 -1.1985 0.0047 9 6 2.1981 -1.1968 0.0052 10 6 1.4439 -2.5015 0.0120 11 6 1.0847 -2.8815 -1.4014 12 1 1.3734 -2.2420 -2.2224 13 6 0.3877 -4.0456 -1.6463 14 7 0.0747 -4.3774 -2.8799 15 14 -0.1110 -5.1521 -0.2264 16 1 -1.4508 -4.7472 0.2698 17 1 -0.1603 -6.5616 -0.6908 18 1 0.8817 -5.0268 0.8709 19 1 -0.3634 0.0045 1.0277 20 1 -0.3634 0.8877 -0.5177 21 1 -0.3633 -0.8923 -0.5099 22 1 5.3547 -0.0058 -0.0017 23 1 4.1190 -2.1348 0.0092 24 1 2.0686 -3.2800 0.4500 25 1 0.5335 -2.3919 0.6013 26 1 -0.4160 -5.1962 -3.0521 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306493312.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:23 Heat of formation + Delta-G solvation = -97.465838 kcal Electronic energy + Delta-G solvation = -13600.984172 eV Core-core repulsion = 10893.398355 eV Total energy + Delta-G solvation = -2707.585817 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.071 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -50.45374 -49.53875 -40.26117 -35.40121 -33.82543 -32.64379 -29.42665 -27.97422 -24.88648 -23.14934 -22.01279 -18.95868 -18.68722 -18.16476 -17.67252 -17.32303 -16.33275 -15.99696 -15.44081 -15.37732 -14.72887 -14.40672 -14.37003 -14.23455 -13.54633 -13.27169 -12.99941 -12.64790 -12.37692 -12.17381 -11.82420 -11.79865 -11.50813 -10.74827 -9.72784 -9.42494 -8.25707 -6.31343 0.01821 0.11035 1.42431 1.44135 1.54711 2.39167 2.46531 2.84209 3.09199 3.36513 3.66329 3.86315 4.11651 4.19307 4.53334 4.74291 4.82647 4.90626 4.95719 5.05182 5.16622 5.21357 5.34595 5.57614 5.74240 5.88261 6.28282 6.75377 7.32207 8.90490 Molecular weight = 212.07amu Principal moments of inertia in cm(-1) A = 0.047163 B = 0.008698 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.541036 B = 3218.421737 C = 3443.784825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C 0.046 3.954 4 F -0.138 7.138 5 C 0.039 3.961 6 F -0.139 7.139 7 C -0.118 4.118 8 C -0.099 4.099 9 C -0.040 4.040 10 C 0.020 3.980 11 C -0.515 4.515 12 H 0.029 0.971 13 C 0.012 3.988 14 N -0.949 5.949 15 Si 0.945 3.055 16 H -0.266 1.266 17 H -0.289 1.289 18 H -0.238 1.238 19 H 0.090 0.910 20 H 0.068 0.932 21 H 0.076 0.924 22 H 0.175 0.825 23 H 0.157 0.843 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 6.601 9.200 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.102 4.102 3 C 0.026 3.974 4 F -0.117 7.117 5 C 0.019 3.981 6 F -0.117 7.117 7 C -0.136 4.136 8 C -0.117 4.117 9 C -0.041 4.041 10 C -0.017 4.017 11 C -0.552 4.552 12 H 0.048 0.952 13 C -0.185 4.185 14 N -0.589 5.589 15 Si 0.768 3.232 16 H -0.191 1.191 17 H -0.215 1.215 18 H -0.161 1.161 19 H 0.109 0.891 20 H 0.087 0.913 21 H 0.095 0.905 22 H 0.192 0.808 23 H 0.174 0.826 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.256 6.576 9.098 12.395 hybrid contribution -0.463 -0.032 -0.164 0.492 sum 4.793 6.544 8.935 12.067 Atomic orbital electron populations 1.20800 0.89323 1.03687 1.03465 1.19859 0.98146 0.90519 1.01636 1.17628 0.88771 0.81805 1.09160 1.91435 1.80265 1.45640 1.94381 1.17724 0.87929 0.82963 1.09507 1.91466 1.79647 1.46109 1.94519 1.21269 1.02252 0.89049 1.01043 1.21278 0.93014 0.98943 0.98464 1.20108 0.94520 0.94828 0.94627 1.18729 0.96142 0.90742 0.96064 1.21030 1.35700 1.06617 0.91897 0.95239 1.25911 0.95273 0.99133 0.98218 1.70057 1.41226 1.25727 1.21890 0.85741 0.80034 0.77483 0.79978 1.19149 1.21461 1.16144 0.89146 0.91331 0.90534 0.80767 0.82568 0.93697 0.94156 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 9.03 71.24 0.64 -3.38 15 2 C -0.10 -3.70 5.88 -19.83 -0.12 -3.82 15 3 C 0.05 1.63 7.25 22.41 0.16 1.79 15 4 F -0.14 -4.86 16.40 44.97 0.74 -4.12 15 5 C 0.04 1.24 7.31 22.41 0.16 1.41 15 6 F -0.14 -4.36 17.18 44.97 0.77 -3.59 15 7 C -0.12 -3.28 10.02 22.30 0.22 -3.06 15 8 C -0.10 -3.12 9.68 22.27 0.22 -2.91 15 9 C -0.04 -1.53 5.07 -19.87 -0.10 -1.63 15 10 C 0.02 0.86 3.49 29.10 0.10 0.96 15 11 C -0.51 -27.47 8.87 25.60 0.23 -27.24 15 12 H 0.03 1.79 7.98 -2.91 -0.02 1.77 15 13 C 0.01 0.66 5.47 84.65 0.46 1.12 15 14 N -0.95 -57.01 13.96 21.45 0.30 -56.71 15 15 Si 0.94 40.76 27.47 68.60 1.88 42.65 15 16 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 15 18 H -0.24 -9.23 6.54 99.48 0.65 -8.58 15 19 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 20 H 0.07 2.22 7.65 -2.39 -0.02 2.20 15 21 H 0.08 3.03 6.16 -2.39 -0.01 3.02 15 22 H 0.17 3.52 8.06 -2.91 -0.02 3.50 15 23 H 0.16 4.27 8.06 -2.91 -0.02 4.24 15 24 H 0.04 1.79 7.11 -2.38 -0.02 1.78 15 25 H 0.04 1.63 6.42 -2.39 -0.02 1.62 15 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 15 Total: -1.00 -61.13 235.71 6.82 -54.32 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 1.14 Total: 4.21 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 1.98 Total: -36.75 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.30 Total: -56.71 kcal Atomic # 9 Polarization: -9.22 SS G_CDS: 1.51 Total: -7.71 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.65 kcal Total: -61.13 6.82 -54.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306493312.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.150 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds