Wall clock time and date at job start Sun Mar 29 2020 21:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29850 * 126.82618 * 2 1 4 4 O 1.20723 * 112.83722 * 180.27464 * 3 2 1 5 5 C 1.34054 * 112.03169 * 359.72629 * 4 3 2 6 6 N 1.37019 * 127.18876 * 180.02562 * 5 4 3 7 7 C 1.40034 * 105.61498 * 359.97438 * 5 4 3 8 8 C 1.46485 * 128.42281 * 179.97438 * 7 5 4 9 9 O 1.21653 * 119.99975 * 90.02616 * 8 7 5 10 10 O 1.34893 * 119.99963 * 269.75049 * 8 7 5 11 11 C 1.34897 * 116.99593 * 180.27042 * 10 8 7 12 12 H 1.07993 * 120.00318 * 0.02562 * 11 10 8 13 13 C 1.38746 * 119.99400 * 179.97438 * 11 10 8 14 14 N 1.31461 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99633 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47099 * 90.00422 * 15 13 11 17 17 H 1.48499 * 109.46984 * 210.00206 * 15 13 11 18 18 H 1.48495 * 109.47185 * 330.00437 * 15 13 11 19 19 H 1.08995 * 109.47382 * 270.17883 * 1 2 3 20 20 H 1.09003 * 109.46705 * 30.17998 * 1 2 3 21 21 H 1.08997 * 109.46982 * 150.17718 * 1 2 3 22 22 H 0.97004 * 119.99456 * 179.97438 * 6 5 4 23 23 H 0.96994 * 120.00680 * 359.97311 * 6 5 4 24 24 H 0.97002 * 120.00065 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2853 1.0394 0.0000 4 8 3.4567 0.7476 -0.0053 5 6 3.6443 -0.5798 -0.0039 6 7 4.8410 -1.2471 -0.0082 7 6 2.3617 -1.1417 0.0041 8 6 1.9884 -2.5582 0.0082 9 8 1.8388 -3.1447 1.0634 10 8 1.8050 -3.2107 -1.1581 11 6 1.4569 -4.5119 -1.0836 12 1 1.3369 -4.9845 -0.1200 13 6 1.2521 -5.2427 -2.2451 14 7 1.3977 -4.6673 -3.4181 15 14 0.7694 -7.0443 -2.1420 16 1 -0.7107 -7.1588 -2.1046 17 1 1.2918 -7.7655 -3.3303 18 1 1.3433 -7.6407 -0.9091 19 1 -0.3634 0.0032 1.0276 20 1 -0.3633 0.8884 -0.5166 21 1 -0.3633 -0.8915 -0.5111 22 1 4.8554 -2.2170 -0.0063 23 1 5.6737 -0.7498 -0.0133 24 1 1.2548 -5.1783 -4.2301 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306498874.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:43 Heat of formation + Delta-G solvation = -45.662612 kcal Electronic energy + Delta-G solvation = -13815.301295 eV Core-core repulsion = 11117.509007 eV Total energy + Delta-G solvation = -2697.792289 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 212.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -45.80730 -40.88059 -37.33630 -36.64168 -35.71734 -34.29189 -30.91277 -29.73766 -27.81737 -25.59571 -22.39878 -21.81534 -19.91352 -19.36279 -18.78526 -18.33813 -18.02482 -17.07349 -16.33009 -16.22360 -15.41940 -14.45879 -14.28365 -14.20479 -13.66368 -13.60905 -13.15825 -12.90641 -12.44131 -12.20180 -12.13381 -12.03818 -11.32376 -10.97861 -10.70683 -9.13483 -8.54544 -6.35238 0.51374 0.98990 1.17412 1.29371 1.37952 1.53219 1.55736 2.14472 2.74624 2.94003 3.03865 3.33767 3.90145 4.06772 4.50785 4.61353 4.72959 4.84422 5.12777 5.21362 5.79357 5.80812 6.35961 6.56001 6.89486 7.31346 7.73696 8.65319 Molecular weight = 212.06amu Principal moments of inertia in cm(-1) A = 0.043918 B = 0.008864 C = 0.008370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.394541 B = 3158.017027 C = 3344.462728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.095 3.905 3 N -0.391 5.391 4 O 0.073 5.927 5 C 0.313 3.687 6 N -0.777 5.777 7 C -0.343 4.343 8 C 0.496 3.504 9 O -0.570 6.570 10 O -0.231 6.231 11 C -0.422 4.422 12 H 0.086 0.914 13 C 0.000 4.000 14 N -0.900 5.900 15 Si 1.018 2.982 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.261 1.261 19 H 0.099 0.901 20 H 0.104 0.896 21 H 0.067 0.933 22 H 0.431 0.569 23 H 0.432 0.568 24 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.191 5.492 3.519 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 N -0.112 5.112 4 O 0.026 5.974 5 C 0.140 3.860 6 N -0.332 5.332 7 C -0.357 4.357 8 C 0.343 3.657 9 O -0.468 6.468 10 O -0.138 6.138 11 C -0.497 4.497 12 H 0.104 0.896 13 C -0.201 4.201 14 N -0.536 5.536 15 Si 0.837 3.163 16 H -0.186 1.186 17 H -0.185 1.185 18 H -0.185 1.185 19 H 0.118 0.882 20 H 0.123 0.877 21 H 0.086 0.914 22 H 0.266 0.734 23 H 0.267 0.733 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.970 6.678 3.540 8.538 hybrid contribution 0.159 -1.713 -0.033 1.721 sum 4.129 4.965 3.507 7.348 Atomic orbital electron populations 1.20325 0.84134 1.04402 1.04665 1.23341 0.99529 0.86304 0.97357 1.73286 0.87958 1.21987 1.27967 1.84719 1.21946 1.18892 1.71799 1.20900 0.88521 0.84124 0.92429 1.40982 1.02478 1.09957 1.79807 1.19280 0.93033 0.92080 1.31346 1.19692 0.77668 0.86100 0.82261 1.90634 1.52747 1.69692 1.33685 1.84097 1.72239 1.25468 1.32045 1.21512 1.49870 0.82977 0.95345 0.89620 1.26562 0.95205 1.05304 0.93056 1.70102 1.45768 1.39392 0.98387 0.84616 0.79198 0.73546 0.78970 1.18559 1.18475 1.18454 0.88240 0.87746 0.91412 0.73379 0.73313 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.50 10.40 71.24 0.74 -1.76 14 2 C 0.09 3.64 7.37 43.94 0.32 3.96 14 3 N -0.39 -13.99 11.97 -47.14 -0.56 -14.56 14 4 O 0.07 2.38 11.16 71.75 0.80 3.18 14 5 C 0.31 10.70 8.77 84.32 0.74 11.44 14 6 N -0.78 -19.33 8.99 -166.36 -1.50 -20.82 14 7 C -0.34 -14.75 6.24 -19.60 -0.12 -14.87 14 8 C 0.50 25.95 7.70 69.97 0.54 26.48 14 9 O -0.57 -32.10 16.36 19.34 0.32 -31.79 14 10 O -0.23 -13.70 9.75 9.25 0.09 -13.61 14 11 C -0.42 -25.15 9.65 67.94 0.66 -24.50 14 12 H 0.09 5.15 6.86 -2.91 -0.02 5.13 14 13 C 0.00 -0.02 5.49 84.87 0.47 0.44 14 14 N -0.90 -52.46 13.67 21.62 0.30 -52.16 14 15 Si 1.02 42.25 29.55 68.60 2.03 44.28 14 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 17 H -0.26 -10.01 7.11 99.48 0.71 -9.30 14 18 H -0.26 -10.48 7.11 99.48 0.71 -9.77 14 19 H 0.10 2.80 8.14 -2.39 -0.02 2.78 14 20 H 0.10 2.73 8.14 -2.39 -0.02 2.71 14 21 H 0.07 2.43 8.14 -2.39 -0.02 2.41 14 22 H 0.43 11.27 8.90 -92.71 -0.83 10.45 14 23 H 0.43 6.69 8.95 -92.71 -0.83 5.86 14 24 H 0.28 14.74 8.31 -92.71 -0.77 13.97 14 Total: -1.00 -74.08 235.85 4.43 -69.65 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.38 Total: 14.63 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 3.34 Total: 1.21 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -1.76 Total: -87.54 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: 1.21 Total: -42.22 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -74.08 4.43 -69.65 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306498874.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.983 kcal (2) G-P(sol) polarization free energy of solvation -74.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds