Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30026 * 126.22347 * 239.69020 * 5 2 1 7 7 O 1.21275 * 110.44281 * 179.80109 * 6 5 2 8 8 C 1.33993 * 109.75156 * 0.46573 * 7 6 5 9 9 O 1.35025 * 126.64847 * 179.71135 * 8 7 6 10 10 C 1.34876 * 117.00037 * 359.97438 * 9 8 7 11 11 H 1.08007 * 119.99766 * 0.02562 * 10 9 8 12 12 C 1.38688 * 120.00355 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00365 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99818 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46934 * 89.99471 * 14 12 10 16 16 H 1.48502 * 109.47064 * 210.00103 * 14 12 10 17 17 H 1.48505 * 109.46726 * 329.99877 * 14 12 10 18 18 N 1.31960 * 106.70795 * 359.71474 * 8 7 6 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 0.96998 * 120.00399 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7875 -1.7686 -1.2522 7 8 3.0164 -2.1022 -2.3955 8 6 2.4172 -1.2548 -3.2431 9 8 2.4524 -1.3046 -4.5919 10 6 3.1619 -2.3071 -5.1494 11 1 3.6690 -3.0242 -4.5208 12 6 3.2396 -2.4177 -6.5297 13 7 3.9309 -3.3954 -7.0732 14 14 2.3620 -1.1777 -7.6168 15 1 3.2724 -0.0406 -7.9053 16 1 1.9651 -1.8298 -8.8906 17 1 1.1507 -0.6772 -6.9185 18 7 1.7861 -0.3621 -2.5041 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 -1.7489 1.2492 26 1 3.1300 -0.7217 1.2490 27 1 1.6767 -0.2075 2.1393 28 1 3.9849 -3.4730 -8.0385 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306511206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = 26.050547 kcal Electronic energy + Delta-G solvation = -14084.298671 eV Core-core repulsion = 11525.449192 eV Total energy + Delta-G solvation = -2558.849478 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.41734 -38.21428 -37.24776 -33.92369 -32.64159 -30.39059 -27.19719 -27.16934 -25.73726 -23.72027 -22.22449 -19.85186 -17.91015 -17.54697 -17.29398 -15.75827 -14.79566 -14.68915 -14.09646 -13.77567 -13.56443 -13.21383 -12.62735 -12.30547 -12.12341 -11.56684 -11.55789 -11.24613 -11.17135 -11.07680 -10.85803 -10.55755 -10.37418 -10.08043 -10.01486 -9.24222 -8.46987 -6.66810 -4.47819 2.18206 2.98763 3.07372 3.19124 3.26633 3.43872 4.04689 4.07021 4.50159 4.77273 4.96048 5.04896 5.24184 5.61173 5.70018 5.83999 5.87988 5.93355 5.97907 6.06343 6.17615 6.39599 6.47736 6.59818 6.85663 7.42915 7.67477 8.54221 8.87488 9.32640 10.39545 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.059218 B = 0.007797 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.719134 B = 3590.126885 C = 3871.789558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.029 3.971 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.196 3.804 6 N -0.407 5.407 7 O 0.024 5.976 8 C 0.373 3.627 9 O -0.145 6.145 10 C -0.418 4.418 11 H 0.115 0.885 12 C 0.081 3.919 13 N -0.857 5.857 14 Si 0.902 3.098 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.254 1.254 18 N -0.526 5.526 19 H 0.067 0.933 20 H 0.063 0.937 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 6.460 10.401 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.078 4.078 6 N -0.137 5.137 7 O -0.026 6.026 8 C 0.123 3.877 9 O -0.039 6.039 10 C -0.494 4.494 11 H 0.132 0.868 12 C -0.127 4.127 13 N -0.494 5.494 14 Si 0.725 3.275 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.178 1.178 18 N -0.284 5.284 19 H 0.086 0.914 20 H 0.082 0.918 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.530 6.360 10.496 13.082 hybrid contribution -0.100 0.162 -0.983 1.002 sum -4.630 6.522 9.513 12.429 Atomic orbital electron populations 1.21825 0.92730 1.02311 1.02512 1.18834 0.96038 0.94514 0.87912 1.21824 1.01205 0.93840 1.02512 1.21790 1.01761 1.00468 0.95358 1.25176 0.96179 0.92942 0.93508 1.74513 1.22693 1.18268 0.98209 1.85377 1.59091 1.47088 1.11087 1.26219 0.89061 0.85430 0.86948 1.83781 1.64803 1.48952 1.06350 1.20740 1.30671 1.05465 0.92490 0.86769 1.24352 0.95743 0.96986 0.95591 1.69596 1.37316 1.29457 1.13036 0.86229 0.81116 0.80604 0.79514 1.19211 1.19953 1.17806 1.72061 1.29800 1.26353 1.00144 0.91371 0.91817 0.92599 0.91826 0.92603 0.91367 0.92066 0.92058 0.91891 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.46 37.16 0.31 -1.44 15 2 C 0.03 0.42 0.99 -155.66 -0.15 0.27 15 3 C -0.14 -1.75 8.46 37.15 0.31 -1.44 15 4 C -0.14 -1.73 7.97 37.16 0.30 -1.44 15 5 C 0.20 3.89 6.40 -156.47 -1.00 2.89 15 6 N -0.41 -8.85 11.46 31.11 0.36 -8.49 15 7 O 0.02 0.57 10.42 -5.94 -0.06 0.51 15 8 C 0.37 9.18 9.08 52.43 0.48 9.66 15 9 O -0.15 -3.86 8.64 -21.06 -0.18 -4.04 15 10 C -0.42 -11.63 10.22 30.90 0.32 -11.31 15 11 H 0.11 3.32 7.36 -52.48 -0.39 2.93 15 12 C 0.08 2.18 5.49 -17.53 -0.10 2.09 15 13 N -0.86 -23.78 13.96 55.48 0.77 -23.01 15 14 Si 0.90 20.64 28.62 -169.99 -4.86 15.78 15 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.25 -5.92 7.11 56.52 0.40 -5.52 15 18 N -0.53 -11.85 11.58 -13.71 -0.16 -12.01 15 19 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 28 H 0.29 7.23 8.31 -40.82 -0.34 6.89 15 LS Contribution 252.01 15.07 3.80 3.80 Total: -1.00 -28.75 252.01 -3.20 -31.95 By element: Atomic # 1 Polarization: -0.45 SS G_CDS: -3.33 Total: -3.77 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 0.46 Total: -0.71 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.97 Total: -43.51 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.24 Total: -3.53 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.86 Total: 15.78 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.75 -3.20 -31.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306511206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.002 kcal (2) G-P(sol) polarization free energy of solvation -28.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds