Wall clock time and date at job start Sun Mar 29 2020 21:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30026 * 126.22347 * 239.69020 * 5 2 1 7 7 O 1.21275 * 110.44281 * 179.80109 * 6 5 2 8 8 C 1.33993 * 109.75156 * 0.46573 * 7 6 5 9 9 O 1.35025 * 126.64847 * 179.71135 * 8 7 6 10 10 C 1.34876 * 117.00037 * 359.97438 * 9 8 7 11 11 H 1.08007 * 119.99766 * 0.02562 * 10 9 8 12 12 C 1.38688 * 120.00355 * 179.97438 * 10 9 8 13 13 N 1.31504 * 120.00365 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99818 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46934 * 89.99471 * 14 12 10 16 16 H 1.48502 * 109.47064 * 210.00103 * 14 12 10 17 17 H 1.48505 * 109.46726 * 329.99877 * 14 12 10 18 18 N 1.31960 * 106.70795 * 359.71474 * 8 7 6 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 0.96998 * 120.00399 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 2.7875 -1.7686 -1.2522 7 8 3.0164 -2.1022 -2.3955 8 6 2.4172 -1.2548 -3.2431 9 8 2.4524 -1.3046 -4.5919 10 6 3.1619 -2.3071 -5.1494 11 1 3.6690 -3.0242 -4.5208 12 6 3.2396 -2.4177 -6.5297 13 7 3.9309 -3.3954 -7.0732 14 14 2.3620 -1.1777 -7.6168 15 1 3.2724 -0.0406 -7.9053 16 1 1.9651 -1.8298 -8.8906 17 1 1.1507 -0.6772 -6.9185 18 7 1.7861 -0.3621 -2.5041 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 -1.7489 1.2492 26 1 3.1300 -0.7217 1.2490 27 1 1.6767 -0.2075 2.1393 28 1 3.9849 -3.4730 -8.0385 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306511206.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:14 Heat of formation + Delta-G solvation = 4.959071 kcal Electronic energy + Delta-G solvation = -14085.213266 eV Core-core repulsion = 11525.449192 eV Total energy + Delta-G solvation = -2559.764073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.21959 -40.20459 -38.56366 -35.61988 -34.69464 -32.15849 -28.32630 -28.17857 -27.72615 -25.36024 -24.01068 -21.54305 -19.81515 -19.32040 -19.13755 -17.50292 -16.61042 -16.10736 -15.68569 -15.24017 -15.05983 -14.89522 -14.55445 -13.37466 -13.32693 -13.03862 -12.91351 -12.61614 -12.60578 -12.45284 -12.33058 -12.14712 -12.00937 -11.79037 -11.63981 -11.18222 -10.38068 -8.73063 -6.63164 0.33021 1.14033 1.29744 1.38712 1.43875 1.60313 2.16502 2.33313 2.68931 2.96926 3.68737 3.96328 4.08709 4.23935 4.72708 4.75939 4.76925 4.85938 4.92918 4.96445 4.97094 5.12598 5.27171 5.27927 5.37499 5.43236 5.65680 6.46184 6.83473 7.42085 8.37583 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.059218 B = 0.007797 C = 0.007230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.719134 B = 3590.126885 C = 3871.789558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.021 3.979 3 C -0.132 4.132 4 C -0.132 4.132 5 C 0.208 3.792 6 N -0.416 5.416 7 O 0.001 5.999 8 C 0.360 3.640 9 O -0.157 6.157 10 C -0.437 4.437 11 H 0.084 0.916 12 C 0.039 3.961 13 N -0.891 5.891 14 Si 0.968 3.032 15 H -0.257 1.257 16 H -0.252 1.252 17 H -0.262 1.262 18 N -0.525 5.525 19 H 0.054 0.946 20 H 0.104 0.896 21 H 0.047 0.953 22 H 0.104 0.896 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 8.228 11.472 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.019 3.981 3 C -0.190 4.190 4 C -0.189 4.189 5 C -0.066 4.066 6 N -0.148 5.148 7 O -0.044 6.044 8 C 0.110 3.890 9 O -0.052 6.052 10 C -0.513 4.513 11 H 0.102 0.898 12 C -0.165 4.165 13 N -0.528 5.528 14 Si 0.787 3.213 15 H -0.181 1.181 16 H -0.175 1.175 17 H -0.186 1.186 18 N -0.282 5.282 19 H 0.074 0.926 20 H 0.123 0.877 21 H 0.066 0.934 22 H 0.123 0.877 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.122 0.878 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.733 8.100 11.569 15.242 hybrid contribution 0.275 -0.381 -1.121 1.216 sum -5.458 7.719 10.448 14.090 Atomic orbital electron populations 1.21841 0.90955 1.02271 1.03941 1.19346 0.97423 0.95280 0.86076 1.21839 1.00741 0.92486 1.03945 1.21801 1.01121 1.00200 0.95817 1.26337 0.94122 0.91855 0.94287 1.74531 1.23817 1.19386 0.97057 1.85389 1.59568 1.47617 1.11853 1.26515 0.89658 0.86119 0.86740 1.83714 1.65267 1.48762 1.07412 1.20587 1.31863 1.05937 0.92945 0.89766 1.25193 0.96107 0.98754 0.96445 1.69647 1.38164 1.30832 1.14164 0.85283 0.79543 0.78348 0.78095 1.18090 1.17537 1.18610 1.72130 1.29189 1.25758 1.01165 0.92648 0.87711 0.93402 0.87724 0.93400 0.92631 0.93107 0.93102 0.87836 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.46 71.98 0.61 -2.39 15 2 C 0.02 0.56 0.99 -52.93 -0.05 0.50 15 3 C -0.13 -3.00 8.46 71.98 0.61 -2.39 15 4 C -0.13 -2.97 7.97 71.98 0.57 -2.39 15 5 C 0.21 8.12 6.40 138.50 0.89 9.01 15 6 N -0.42 -18.22 11.46 -59.50 -0.68 -18.90 15 7 O 0.00 0.06 10.42 93.76 0.98 1.04 15 8 C 0.36 18.17 9.08 130.36 1.18 19.35 15 9 O -0.16 -8.54 8.64 6.70 0.06 -8.48 15 10 C -0.44 -25.24 10.22 67.93 0.69 -24.55 15 11 H 0.08 5.21 7.36 -2.91 -0.02 5.19 15 12 C 0.04 2.16 5.49 84.85 0.47 2.63 15 13 N -0.89 -50.04 13.96 21.62 0.30 -49.74 15 14 Si 0.97 42.22 28.62 68.60 1.96 44.18 15 15 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 16 H -0.25 -9.98 7.11 99.48 0.71 -9.27 15 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 15 18 N -0.52 -23.63 11.58 -427.63 -4.95 -28.58 15 19 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 20 H 0.10 1.55 8.14 -2.39 -0.02 1.53 15 21 H 0.05 1.16 8.14 -2.38 -0.02 1.14 15 22 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 23 H 0.05 1.15 8.14 -2.39 -0.02 1.14 15 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 28 H 0.30 14.98 8.31 -92.71 -0.77 14.21 15 Total: -1.00 -63.29 252.01 3.79 -59.50 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: 1.15 Total: 1.21 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.97 Total: -0.23 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -5.33 Total: -97.22 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 1.04 Total: -7.45 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.96 Total: 44.18 kcal Total: -63.29 3.79 -59.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306511206.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.462 kcal (2) G-P(sol) polarization free energy of solvation -63.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds