Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.53307 * 2 1 4 4 C 1.53042 * 109.55478 * 120.06434 * 2 1 3 5 5 N 1.46847 * 109.57669 * 179.05721 * 4 2 1 6 6 C 1.46890 * 111.00403 * 174.19945 * 5 4 2 7 7 C 1.50701 * 109.47418 * 59.31739 * 6 5 4 8 8 H 1.07997 * 119.99985 * 5.00862 * 7 6 5 9 9 C 1.37877 * 120.00125 * 185.00898 * 7 6 5 10 10 N 1.31519 * 119.99879 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00004 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47044 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46777 * 120.00217 * 11 9 7 14 14 H 1.48499 * 109.47166 * 240.00118 * 11 9 7 15 15 C 1.46851 * 111.19754 * 298.29420 * 5 4 2 16 16 C 1.53044 * 109.52275 * 61.74067 * 15 5 4 17 17 C 1.53000 * 109.50232 * 180.87952 * 16 15 5 18 18 C 1.52993 * 109.53520 * 60.78387 * 16 15 5 19 19 C 1.53114 * 109.50497 * 239.90002 * 2 1 3 20 20 H 1.09000 * 109.46998 * 180.09489 * 1 2 3 21 21 H 1.09001 * 109.47342 * 300.10347 * 1 2 3 22 22 H 1.09008 * 109.46795 * 60.09847 * 1 2 3 23 23 H 1.08998 * 109.40661 * 59.04577 * 4 2 1 24 24 H 1.08997 * 109.45968 * 299.10342 * 4 2 1 25 25 H 1.09000 * 109.47790 * 179.32137 * 6 5 4 26 26 H 1.09008 * 109.46651 * 299.31646 * 6 5 4 27 27 H 0.97002 * 119.99819 * 180.02562 * 10 9 7 28 28 H 1.08997 * 109.46305 * 301.72229 * 15 5 4 29 29 H 1.08992 * 109.45671 * 181.74891 * 15 5 4 30 30 H 1.09000 * 109.47073 * 179.79805 * 17 16 15 31 31 H 1.08996 * 109.47310 * 299.80441 * 17 16 15 32 32 H 1.09007 * 109.46949 * 59.80037 * 17 16 15 33 33 H 1.09006 * 109.47271 * 300.17270 * 18 16 15 34 34 H 1.08991 * 109.47807 * 60.17561 * 18 16 15 35 35 H 1.08998 * 109.46867 * 180.17990 * 18 16 15 36 36 H 1.09006 * 109.52630 * 62.50253 * 19 2 1 37 37 H 1.08992 * 109.52631 * 302.37319 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7225 1.2481 5 7 3.5106 -0.7425 1.2373 6 6 4.0387 -1.3063 2.4866 7 6 3.5240 -2.7120 2.6605 8 1 2.9366 -3.1724 1.8799 9 6 3.8030 -3.4103 3.8162 10 7 4.5179 -2.8494 4.7670 11 14 3.1644 -5.1524 4.0320 12 1 2.3922 -5.5494 2.8273 13 1 4.3095 -6.0804 4.2135 14 1 2.2843 -5.2126 5.2267 15 6 4.0230 -1.4743 0.0718 16 6 3.5712 -0.7732 -1.2115 17 6 4.0869 -1.5483 -2.4257 18 6 4.1292 0.6510 -1.2400 19 6 2.0412 -0.7238 -1.2486 20 1 -0.3633 -1.0277 0.0017 21 1 -0.3634 0.5154 0.8890 22 1 -0.3633 0.5123 -0.8909 23 1 1.6652 -1.7451 1.2550 24 1 1.6928 -0.2006 2.1389 25 1 5.1279 -1.3205 2.4471 26 1 3.7136 -0.6937 3.3276 27 1 4.7144 -3.3408 5.5799 28 1 3.6367 -2.4934 0.0842 29 1 5.1121 -1.4983 0.1082 30 1 3.7618 -1.0506 -3.3393 31 1 5.1760 -1.5832 -2.3986 32 1 3.6902 -2.5634 -2.4040 33 1 3.7626 1.2023 -0.3740 34 1 5.2182 0.6153 -1.2135 35 1 3.8042 1.1503 -2.1527 36 1 1.7158 -0.1871 -2.1398 37 1 1.6444 -1.7387 -1.2695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306596097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = -26.127726 kcal Electronic energy + Delta-G solvation = -15072.715085 eV Core-core repulsion = 12848.695087 eV Total energy + Delta-G solvation = -2224.019998 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14623 -34.57596 -33.45151 -32.05611 -27.13729 -26.74615 -26.18301 -25.86438 -23.78924 -20.58659 -20.01931 -18.03554 -16.31976 -14.98520 -14.61110 -14.37374 -14.27396 -13.55159 -13.53088 -12.72126 -12.42402 -12.15181 -12.03244 -11.81902 -11.53035 -11.40480 -11.18344 -10.97207 -10.83790 -10.80454 -10.36215 -10.16062 -10.08172 -9.92740 -9.69344 -9.55299 -9.27902 -8.41141 -7.06947 -5.99825 -4.09052 3.26782 3.34907 3.38456 4.42014 4.97836 5.09111 5.23401 5.30039 5.37691 5.48783 5.71556 5.85579 5.93386 5.95929 6.02184 6.12279 6.16344 6.19363 6.25534 6.31636 6.38906 6.45889 6.53945 6.63681 6.69607 6.79588 6.86620 6.91497 7.04999 7.35814 7.56482 7.93184 8.14560 8.34778 8.40255 9.02496 9.57622 11.04607 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.009391 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.673135 B = 2981.018535 C = 3178.608829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 H 0.073 0.927 4 C 0.072 3.928 5 N -0.540 5.540 6 C 0.187 3.813 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.887 3.113 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.077 3.923 16 C -0.067 4.067 17 C -0.138 4.138 18 C -0.128 4.128 19 C -0.099 4.099 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.037 0.963 36 H 0.052 0.948 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 4.507 -11.197 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.091 0.909 4 C -0.057 4.057 5 N -0.263 5.263 6 C 0.061 3.939 7 C -0.585 4.585 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.715 3.285 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.052 4.052 16 C -0.068 4.068 17 C -0.196 4.196 18 C -0.185 4.185 19 C -0.137 4.137 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.878 4.964 -11.037 12.708 hybrid contribution -0.575 -2.001 0.378 2.116 sum -4.453 2.962 -10.659 11.926 Atomic orbital electron populations 1.21779 0.96015 1.01406 1.00924 1.21274 0.94194 1.00272 0.95553 0.90892 1.21863 0.89451 0.98623 0.95751 1.62378 1.06710 1.53216 1.03983 1.19735 0.95339 0.92850 0.85960 1.21807 1.33797 1.00448 1.02445 0.92538 1.24967 0.95029 0.97963 0.95899 1.69958 1.38586 1.37208 1.07260 0.86618 0.78738 0.85099 0.78044 1.19909 1.20972 1.20962 1.21874 0.99056 0.95104 0.89190 1.20647 0.94928 0.96103 0.95085 1.21821 1.00827 0.99787 0.97166 1.21739 1.00089 0.95721 1.00978 1.21635 0.94887 0.99972 0.97164 0.93047 0.92853 0.93334 0.94573 0.92021 0.95578 0.94839 0.92930 0.94805 0.92072 0.93239 0.92840 0.93062 0.91119 0.93474 0.94382 0.92950 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.20 37.16 0.34 -1.60 16 2 C -0.09 -1.49 2.53 -90.54 -0.23 -1.72 16 3 H 0.07 1.16 6.59 -51.93 -0.34 0.81 16 4 C 0.07 1.43 4.32 -3.83 -0.02 1.42 16 5 N -0.54 -11.70 4.14 -236.11 -0.98 -12.68 16 6 C 0.19 4.88 5.12 -4.98 -0.03 4.86 16 7 C -0.55 -15.18 7.72 -34.44 -0.27 -15.44 16 8 H 0.06 1.57 5.86 -52.49 -0.31 1.27 16 9 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.08 1.51 3.84 -3.83 -0.01 1.50 16 16 C -0.07 -1.06 0.77 -154.43 -0.12 -1.18 16 17 C -0.14 -1.89 8.48 37.16 0.32 -1.57 16 18 C -0.13 -1.90 8.04 37.15 0.30 -1.60 16 19 C -0.10 -1.49 4.07 -26.61 -0.11 -1.60 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.04 0.79 6.73 -51.93 -0.35 0.44 16 24 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 25 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 26 H 0.03 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.74 6.86 -51.93 -0.36 0.38 16 29 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.14 6.02 -51.93 -0.31 0.83 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 282.04 15.07 4.25 4.25 Total: -1.00 -28.57 282.04 -7.65 -36.22 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.71 Total: -3.47 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.24 Total: -38.42 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.57 -7.65 -36.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306596097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.089 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds