Wall clock time and date at job start Sun Mar 29 2020 21:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.53307 * 2 1 4 4 C 1.53042 * 109.55478 * 120.06434 * 2 1 3 5 5 N 1.46847 * 109.57669 * 179.05721 * 4 2 1 6 6 C 1.46890 * 111.00403 * 174.19945 * 5 4 2 7 7 C 1.50701 * 109.47418 * 59.31739 * 6 5 4 8 8 H 1.07997 * 119.99985 * 5.00862 * 7 6 5 9 9 C 1.37877 * 120.00125 * 185.00898 * 7 6 5 10 10 N 1.31519 * 119.99879 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00004 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47044 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46777 * 120.00217 * 11 9 7 14 14 H 1.48499 * 109.47166 * 240.00118 * 11 9 7 15 15 C 1.46851 * 111.19754 * 298.29420 * 5 4 2 16 16 C 1.53044 * 109.52275 * 61.74067 * 15 5 4 17 17 C 1.53000 * 109.50232 * 180.87952 * 16 15 5 18 18 C 1.52993 * 109.53520 * 60.78387 * 16 15 5 19 19 C 1.53114 * 109.50497 * 239.90002 * 2 1 3 20 20 H 1.09000 * 109.46998 * 180.09489 * 1 2 3 21 21 H 1.09001 * 109.47342 * 300.10347 * 1 2 3 22 22 H 1.09008 * 109.46795 * 60.09847 * 1 2 3 23 23 H 1.08998 * 109.40661 * 59.04577 * 4 2 1 24 24 H 1.08997 * 109.45968 * 299.10342 * 4 2 1 25 25 H 1.09000 * 109.47790 * 179.32137 * 6 5 4 26 26 H 1.09008 * 109.46651 * 299.31646 * 6 5 4 27 27 H 0.97002 * 119.99819 * 180.02562 * 10 9 7 28 28 H 1.08997 * 109.46305 * 301.72229 * 15 5 4 29 29 H 1.08992 * 109.45671 * 181.74891 * 15 5 4 30 30 H 1.09000 * 109.47073 * 179.79805 * 17 16 15 31 31 H 1.08996 * 109.47310 * 299.80441 * 17 16 15 32 32 H 1.09007 * 109.46949 * 59.80037 * 17 16 15 33 33 H 1.09006 * 109.47271 * 300.17270 * 18 16 15 34 34 H 1.08991 * 109.47807 * 60.17561 * 18 16 15 35 35 H 1.08998 * 109.46867 * 180.17990 * 18 16 15 36 36 H 1.09006 * 109.52630 * 62.50253 * 19 2 1 37 37 H 1.08992 * 109.52631 * 302.37319 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7225 1.2481 5 7 3.5106 -0.7425 1.2373 6 6 4.0387 -1.3063 2.4866 7 6 3.5240 -2.7120 2.6605 8 1 2.9366 -3.1724 1.8799 9 6 3.8030 -3.4103 3.8162 10 7 4.5179 -2.8494 4.7670 11 14 3.1644 -5.1524 4.0320 12 1 2.3922 -5.5494 2.8273 13 1 4.3095 -6.0804 4.2135 14 1 2.2843 -5.2126 5.2267 15 6 4.0230 -1.4743 0.0718 16 6 3.5712 -0.7732 -1.2115 17 6 4.0869 -1.5483 -2.4257 18 6 4.1292 0.6510 -1.2400 19 6 2.0412 -0.7238 -1.2486 20 1 -0.3633 -1.0277 0.0017 21 1 -0.3634 0.5154 0.8890 22 1 -0.3633 0.5123 -0.8909 23 1 1.6652 -1.7451 1.2550 24 1 1.6928 -0.2006 2.1389 25 1 5.1279 -1.3205 2.4471 26 1 3.7136 -0.6937 3.3276 27 1 4.7144 -3.3408 5.5799 28 1 3.6367 -2.4934 0.0842 29 1 5.1121 -1.4983 0.1082 30 1 3.7618 -1.0506 -3.3393 31 1 5.1760 -1.5832 -2.3986 32 1 3.6902 -2.5634 -2.4040 33 1 3.7626 1.2023 -0.3740 34 1 5.2182 0.6153 -1.2135 35 1 3.8042 1.1503 -2.1527 36 1 1.7158 -0.1871 -2.1398 37 1 1.6444 -1.7387 -1.2695 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306596097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:27 Heat of formation + Delta-G solvation = -43.099895 kcal Electronic energy + Delta-G solvation = -15073.451053 eV Core-core repulsion = 12848.695087 eV Total energy + Delta-G solvation = -2224.755966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62454 -36.33539 -34.81268 -34.08223 -29.00884 -28.01719 -27.40479 -27.33972 -25.74231 -22.38610 -21.39305 -19.55037 -18.36637 -16.85385 -16.15538 -15.94214 -15.68675 -15.23266 -14.92113 -14.33588 -14.03411 -13.59286 -13.37489 -13.34384 -12.91584 -12.81584 -12.77947 -12.58154 -12.48391 -12.23632 -12.06959 -11.95508 -11.80076 -11.54383 -11.22409 -10.90877 -10.83716 -10.63659 -8.97993 -8.16748 -6.37879 1.32468 1.33320 1.45365 2.34129 3.06007 3.37418 3.81444 3.96056 4.07218 4.19363 4.45883 4.54734 4.70352 4.75275 4.78266 4.82688 4.91256 4.94437 5.02077 5.05282 5.08591 5.15478 5.25037 5.26082 5.28303 5.31436 5.33422 5.42721 5.53205 5.56630 5.73033 5.76504 6.05297 6.28999 6.60259 6.84652 7.33653 8.84567 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032985 B = 0.009391 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.673135 B = 2981.018535 C = 3178.608829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.079 0.921 4 C 0.074 3.926 5 N -0.537 5.537 6 C 0.199 3.801 7 C -0.554 4.554 8 H 0.053 0.947 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.079 3.921 16 C -0.064 4.064 17 C -0.134 4.134 18 C -0.123 4.123 19 C -0.096 4.096 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.011 0.989 24 H 0.046 0.954 25 H 0.000 1.000 26 H 0.005 0.995 27 H 0.265 0.735 28 H 0.008 0.992 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 4.516 -13.330 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.055 4.055 5 N -0.259 5.259 6 C 0.072 3.928 7 C -0.593 4.593 8 H 0.071 0.929 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.202 1.202 14 H -0.201 1.201 15 C -0.050 4.050 16 C -0.064 4.064 17 C -0.192 4.192 18 C -0.181 4.181 19 C -0.134 4.134 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.030 0.970 24 H 0.065 0.935 25 H 0.018 0.982 26 H 0.023 0.977 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.085 4.980 -13.187 14.985 hybrid contribution -0.169 -1.966 1.060 2.239 sum -5.253 3.015 -12.128 13.556 Atomic orbital electron populations 1.21746 0.93863 1.01617 1.02423 1.21230 0.95913 0.99838 0.93542 0.90294 1.21913 0.88001 0.97680 0.97884 1.62335 1.07993 1.52762 1.02840 1.19397 0.93730 0.92211 0.87420 1.21985 1.33691 1.01142 1.02518 0.92924 1.25839 0.95172 1.02361 0.95540 1.70076 1.39619 1.39047 1.07832 0.85516 0.78327 0.79718 0.78191 1.19337 1.20169 1.20140 1.21928 0.98132 0.94276 0.90641 1.20654 0.95823 0.96591 0.93376 1.21787 1.00890 0.99497 0.96990 1.21689 0.99880 0.94804 1.01694 1.21648 0.93957 0.99924 0.97851 0.93486 0.92757 0.90483 0.97027 0.93502 0.98195 0.97708 0.92573 0.97322 0.93450 0.90453 0.92758 0.93470 0.92807 0.93774 0.91384 0.89602 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.20 71.98 0.66 -2.75 16 2 C -0.09 -2.59 2.53 -10.74 -0.03 -2.62 16 3 H 0.08 2.32 6.59 -2.38 -0.02 2.30 16 4 C 0.07 3.00 4.32 86.33 0.37 3.37 16 5 N -0.54 -24.06 4.14 -900.93 -3.73 -27.80 16 6 C 0.20 10.98 5.12 85.56 0.44 11.42 16 7 C -0.55 -31.90 7.72 25.60 0.20 -31.70 16 8 H 0.05 3.02 5.86 -2.91 -0.02 3.00 16 9 C 0.01 0.59 5.46 84.65 0.46 1.05 16 10 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 11 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.08 3.18 3.84 86.33 0.33 3.51 16 16 C -0.06 -1.90 0.77 -52.13 -0.04 -1.94 16 17 C -0.13 -3.29 8.48 71.98 0.61 -2.68 16 18 C -0.12 -3.37 8.04 71.98 0.58 -2.79 16 19 C -0.10 -2.64 4.07 30.67 0.12 -2.51 16 20 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 23 H 0.01 0.52 6.73 -2.39 -0.02 0.50 16 24 H 0.05 2.00 8.12 -2.39 -0.02 1.98 16 25 H 0.00 0.00 8.08 -2.39 -0.02 -0.02 16 26 H 0.00 0.28 8.14 -2.38 -0.02 0.27 16 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.01 0.38 6.86 -2.39 -0.02 0.37 16 29 H 0.05 1.99 8.08 -2.39 -0.02 1.97 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.05 1.65 6.02 -2.38 -0.01 1.63 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.08 282.04 3.29 -59.80 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.00 Total: 4.73 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.71 Total: -27.65 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -3.45 Total: -83.91 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.08 3.29 -59.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306596097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.697 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds