Wall clock time and date at job start Sun Mar 29 2020 21:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.38169 * 119.96120 * 89.99986 * 10 9 7 12 12 C 1.38725 * 119.96853 * 180.02562 * 11 10 9 13 13 O 1.35899 * 120.05239 * 179.97438 * 12 11 10 14 14 C 1.38738 * 119.90079 * 0.02562 * 12 11 10 15 15 C 1.38237 * 119.93050 * 0.02562 * 14 12 11 16 16 Cl 1.73597 * 119.98497 * 179.97438 * 15 14 12 17 17 C 1.38216 * 119.96652 * 269.73299 * 10 9 7 18 18 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 19 19 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 20 20 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 21 21 H 1.07999 * 120.01980 * 359.97438 * 11 10 9 22 22 H 0.96693 * 114.00062 * 89.99360 * 13 12 11 23 23 H 1.07994 * 120.02952 * 179.97438 * 14 12 11 24 24 H 1.07998 * 119.95509 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6787 -4.1691 1.1965 12 6 3.5806 -5.2232 1.1967 13 8 4.0231 -5.7401 2.3731 14 6 4.0309 -5.7483 -0.0059 15 6 3.5804 -5.2197 -1.2011 16 17 4.1435 -5.8752 -2.7067 17 6 2.6747 -4.1730 -1.1979 18 1 -0.4849 0.8400 0.0004 19 1 0.6241 -2.5566 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.3280 -3.7582 2.1316 22 1 3.4799 -6.4638 2.7138 23 1 4.7333 -6.5687 -0.0082 24 1 2.3194 -3.7647 -2.1324 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306596849.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:49 Heat of formation + Delta-G solvation = -42.486195 kcal Electronic energy + Delta-G solvation = -11347.018038 eV Core-core repulsion = 9057.779903 eV Total energy + Delta-G solvation = -2289.238135 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.38311 -36.84758 -35.99338 -33.32520 -31.20605 -29.35807 -27.22269 -23.51701 -22.18599 -20.75394 -17.70365 -16.42672 -16.01480 -15.56814 -15.03503 -14.50643 -14.03776 -12.94153 -12.68596 -12.28388 -12.05157 -11.65971 -11.19190 -11.06886 -10.74741 -10.68567 -10.53520 -10.39220 -9.66726 -9.53285 -8.49039 -8.21810 -8.08117 -6.11682 -4.16228 1.55162 1.70063 2.39536 3.29578 3.33491 3.37056 3.98624 4.39229 4.50331 5.23720 5.26869 5.54469 5.64979 5.91821 6.03730 6.34427 6.59469 6.76103 6.88803 7.15872 7.42062 7.62435 7.83530 7.86717 8.20099 8.88242 9.48344 10.98241 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.008430 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.987254 B = 3320.736963 C = 3788.402933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.006 4.006 11 C -0.142 4.142 12 C 0.110 3.890 13 O -0.498 6.498 14 C -0.167 4.167 15 C -0.018 4.018 16 Cl -0.085 7.085 17 C -0.121 4.121 18 H 0.264 0.736 19 H 0.034 0.966 20 H 0.034 0.966 21 H 0.131 0.869 22 H 0.385 0.615 23 H 0.128 0.872 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -10.790 -0.171 11.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.006 4.006 11 C -0.161 4.161 12 C 0.065 3.935 13 O -0.307 6.307 14 C -0.186 4.186 15 C -0.044 4.044 16 Cl -0.057 7.057 17 C -0.140 4.140 18 H 0.074 0.926 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.149 0.851 22 H 0.240 0.760 23 H 0.146 0.854 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.153 -10.303 -0.365 11.526 hybrid contribution 0.221 0.506 -0.057 0.555 sum 5.374 -9.797 -0.422 11.182 Atomic orbital electron populations 1.69939 1.06039 1.27135 1.50000 1.24996 0.94912 0.99327 0.94919 0.86561 0.79533 0.82572 0.78848 1.20062 1.21149 1.20089 1.20981 0.93090 0.89660 1.51766 0.92371 1.18412 0.92364 0.89166 0.98915 1.20579 0.95240 0.94226 0.90580 1.21498 0.97775 0.97237 0.99571 1.18267 0.95598 0.95195 0.84404 1.84827 1.55118 1.54583 1.36214 1.20969 1.04086 1.03019 0.90526 1.20679 0.99710 0.98030 0.85993 1.98330 1.88713 1.85643 1.32979 1.21074 0.97739 0.95470 0.99733 0.92646 0.94774 0.94811 0.85061 0.75956 0.85415 0.84923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.04 14 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 14 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 14 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 14 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 14 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 7 C -0.52 -14.16 9.09 -34.44 -0.31 -14.48 14 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 14 9 C 0.05 1.19 5.10 -29.03 -0.15 1.04 14 10 C -0.01 -0.12 5.07 -104.65 -0.53 -0.65 14 11 C -0.14 -2.69 9.64 -39.43 -0.38 -3.07 14 12 C 0.11 1.83 6.70 -39.22 -0.26 1.57 14 13 O -0.50 -7.10 13.50 -19.42 -0.26 -7.36 14 14 C -0.17 -2.68 9.77 -39.40 -0.38 -3.06 14 15 C -0.02 -0.30 6.32 -39.52 -0.25 -0.55 14 16 Cl -0.09 -1.27 28.95 -51.86 -1.50 -2.77 14 17 C -0.12 -2.32 9.48 -39.52 -0.37 -2.70 14 18 H 0.26 7.22 8.31 -40.82 -0.34 6.88 14 19 H 0.03 0.88 8.08 -51.93 -0.42 0.46 14 20 H 0.03 0.87 8.08 -51.93 -0.42 0.45 14 21 H 0.13 2.43 8.06 -52.49 -0.42 2.01 14 22 H 0.39 3.38 9.06 45.56 0.41 3.80 14 23 H 0.13 1.78 8.06 -52.49 -0.42 1.36 14 24 H 0.13 2.49 8.06 -52.49 -0.42 2.07 14 LS Contribution 238.69 15.07 3.60 3.60 Total: -1.00 -29.38 238.69 -6.43 -35.81 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -1.24 Total: -0.21 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.74 Total: -20.31 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.26 Total: -7.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -1.50 Total: -2.77 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.38 -6.43 -35.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306596849.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.677 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds