Wall clock time and date at job start Sun Mar 29 2020 21:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00018 * 3 2 1 5 5 H 1.48505 * 109.47151 * 29.99663 * 3 2 1 6 6 H 1.48491 * 109.46932 * 150.00045 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21623 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.47255 * 119.99800 * 180.27778 * 11 10 9 14 14 N 1.30550 * 125.54480 * 359.42149 * 13 11 10 15 15 C 1.30705 * 115.90793 * 179.77814 * 14 13 11 16 16 C 1.34233 * 115.78278 * 0.52395 * 15 14 13 17 17 S 1.71068 * 109.08949 * 359.71764 * 16 15 14 18 18 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.47217 * 60.00012 * 9 7 2 20 20 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 21 21 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 22 22 H 1.08002 * 122.11256 * 180.21840 * 15 14 13 23 23 H 1.08005 * 125.45375 * 179.72607 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5583 -5.1056 0.0011 13 6 2.7111 -6.0024 0.0072 14 7 4.0116 -5.8889 0.0018 15 6 4.6828 -7.0104 0.0135 16 6 3.9455 -8.1321 0.0186 17 16 2.2873 -7.7116 0.0155 18 1 -0.4851 0.8399 -0.0004 19 1 0.6249 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 3.1569 -3.4353 0.0009 22 1 5.7626 -7.0333 0.0140 23 1 4.3365 -9.1389 0.0239 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306605466.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:03 Heat of formation + Delta-G solvation = 3.890847 kcal Electronic energy + Delta-G solvation = -11243.847043 eV Core-core repulsion = 8990.956424 eV Total energy + Delta-G solvation = -2252.890618 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.81129 -38.38177 -34.29135 -32.39708 -30.55164 -27.54134 -25.84538 -22.90068 -21.34292 -19.43817 -18.47160 -17.01739 -15.93738 -15.19044 -15.05430 -14.88791 -14.23498 -13.66817 -13.42726 -12.87859 -11.99205 -11.86990 -11.49443 -10.99583 -10.89077 -10.35434 -10.05137 -9.66313 -9.48462 -9.37660 -8.90623 -8.75406 -7.96807 -6.17328 -4.24226 0.35529 1.23960 1.75641 2.53942 3.26052 3.31988 3.35111 3.66763 3.84138 4.32293 4.57220 5.02292 5.19109 5.31533 5.39684 6.06142 7.20731 7.26306 7.45179 7.53378 7.67344 7.93144 8.50596 8.68855 8.94013 9.41779 10.92858 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.067405 B = 0.006589 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.296719 B = 4248.802274 C = 4648.944777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.247 3.753 10 N -0.678 5.678 11 C 0.574 3.426 12 O -0.543 6.543 13 C 0.006 3.994 14 N -0.433 5.433 15 C 0.030 3.970 16 C -0.294 4.294 17 S 0.228 5.772 18 H 0.266 0.734 19 H 0.033 0.967 20 H 0.033 0.967 21 H 0.403 0.597 22 H 0.175 0.825 23 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -13.841 0.048 15.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.127 3.873 10 N -0.325 5.325 11 C 0.354 3.646 12 O -0.422 6.422 13 C -0.270 4.270 14 N -0.150 5.150 15 C -0.127 4.127 16 C -0.436 4.436 17 S 0.483 5.517 18 H 0.076 0.924 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.237 0.763 22 H 0.192 0.808 23 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.127 -13.837 0.044 15.133 hybrid contribution 2.048 0.826 -0.008 2.208 sum 8.175 -13.010 0.036 15.366 Atomic orbital electron populations 1.69968 1.06097 1.27411 1.48829 1.24944 0.94945 0.99484 0.94600 0.86373 0.79636 0.82421 0.78259 1.20420 1.20983 1.19673 1.21211 0.93458 0.90180 1.53364 0.91639 1.19295 0.88199 0.81554 0.98255 1.46360 1.12325 1.04885 1.68974 1.16847 0.86194 0.82292 0.79267 1.90822 1.14658 1.84369 1.52310 1.28271 0.93499 0.97660 1.07523 1.66849 1.04519 1.30636 1.13016 1.21730 1.02122 0.85663 1.03217 1.26808 0.99099 1.05185 1.12459 1.84010 1.03399 1.01729 1.62566 0.92387 0.94890 0.94871 0.76303 0.80840 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 14 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 14 3 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 14 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 14 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 14 8 H 0.07 1.70 7.60 -52.49 -0.40 1.30 14 9 C 0.25 6.60 5.43 -5.19 -0.03 6.58 14 10 N -0.68 -15.22 5.54 -62.62 -0.35 -15.57 14 11 C 0.57 12.29 7.81 -12.60 -0.10 12.19 14 12 O -0.54 -13.09 16.94 5.26 0.09 -13.00 14 13 C 0.01 0.11 7.46 -14.43 -0.11 0.00 14 14 N -0.43 -6.91 10.24 -11.51 -0.12 -7.03 14 15 C 0.03 0.36 11.24 -19.44 -0.22 0.14 14 16 C -0.29 -3.08 11.09 29.32 0.33 -2.76 14 17 S 0.23 2.98 23.03 -107.50 -2.48 0.51 14 18 H 0.27 7.32 8.31 -40.82 -0.34 6.98 14 19 H 0.03 0.96 8.14 -51.93 -0.42 0.53 14 20 H 0.03 0.96 8.14 -51.93 -0.42 0.54 14 21 H 0.40 8.30 7.98 -40.82 -0.33 7.97 14 22 H 0.17 1.56 8.06 -52.49 -0.42 1.14 14 23 H 0.18 1.22 8.06 -52.48 -0.42 0.80 14 LS Contribution 233.94 15.07 3.53 3.53 Total: -1.00 -31.09 233.94 -5.71 -36.80 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -1.55 Total: 1.45 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.54 Total: 2.61 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.27 Total: -47.83 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.09 Total: -13.00 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -2.48 Total: 0.51 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.09 -5.71 -36.80 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306605466.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.690 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds