Wall clock time and date at job start Sun Mar 29 2020 21:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48500 * 109.46973 * 270.00018 * 3 2 1 5 5 H 1.48505 * 109.47151 * 29.99663 * 3 2 1 6 6 H 1.48491 * 109.46932 * 150.00045 * 3 2 1 7 7 C 1.37869 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00348 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00027 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.46923 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99854 * 179.97438 * 10 9 7 12 12 O 1.21623 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.47255 * 119.99800 * 180.27778 * 11 10 9 14 14 N 1.30550 * 125.54480 * 359.42149 * 13 11 10 15 15 C 1.30705 * 115.90793 * 179.77814 * 14 13 11 16 16 C 1.34233 * 115.78278 * 0.52395 * 15 14 13 17 17 S 1.71068 * 109.08949 * 359.71764 * 16 15 14 18 18 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 19 19 H 1.08992 * 109.47217 * 60.00012 * 9 7 2 20 20 H 1.08997 * 109.47150 * 299.99545 * 9 7 2 21 21 H 0.97000 * 120.00410 * 0.02562 * 10 9 7 22 22 H 1.08002 * 122.11256 * 180.21840 * 15 14 13 23 23 H 1.08005 * 125.45375 * 179.72607 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7541 -4.8833 0.0011 12 8 0.5583 -5.1056 0.0011 13 6 2.7111 -6.0024 0.0072 14 7 4.0116 -5.8889 0.0018 15 6 4.6828 -7.0104 0.0135 16 6 3.9455 -8.1321 0.0186 17 16 2.2873 -7.7116 0.0155 18 1 -0.4851 0.8399 -0.0004 19 1 0.6249 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 3.1569 -3.4353 0.0009 22 1 5.7626 -7.0333 0.0140 23 1 4.3365 -9.1389 0.0239 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306605466.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:03 Heat of formation + Delta-G solvation = -20.225954 kcal Electronic energy + Delta-G solvation = -11244.892826 eV Core-core repulsion = 8990.956424 eV Total energy + Delta-G solvation = -2253.936401 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.036 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10004 -39.92057 -36.25765 -34.42140 -31.74621 -29.39959 -27.24331 -24.77420 -22.80320 -20.96554 -19.72978 -18.59903 -17.66618 -17.03713 -16.58600 -16.32579 -15.75173 -15.11684 -14.76659 -14.29380 -14.04403 -13.91885 -12.95975 -12.72270 -12.44401 -12.25512 -11.53381 -11.50055 -10.87182 -10.83199 -10.70195 -10.10940 -9.80370 -8.30477 -6.47185 -0.78357 0.13081 0.75486 1.36945 1.43630 1.46178 1.57681 2.18415 2.27598 2.46510 3.04248 3.21520 4.05287 4.31932 4.41968 5.00836 5.12579 5.18631 5.36792 5.58139 5.79637 6.43878 6.59960 6.75012 7.12230 7.28371 8.81590 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.067405 B = 0.006589 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.296719 B = 4248.802274 C = 4648.944777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.560 4.560 8 H 0.080 0.920 9 C 0.265 3.735 10 N -0.682 5.682 11 C 0.576 3.424 12 O -0.582 6.582 13 C -0.058 4.058 14 N -0.440 5.440 15 C 0.009 3.991 16 C -0.250 4.250 17 S 0.266 5.734 18 H 0.271 0.729 19 H -0.001 1.001 20 H -0.001 1.001 21 H 0.411 0.589 22 H 0.210 0.790 23 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -15.221 0.059 18.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.598 4.598 8 H 0.098 0.902 9 C 0.142 3.858 10 N -0.330 5.330 11 C 0.360 3.640 12 O -0.464 6.464 13 C -0.330 4.330 14 N -0.160 5.160 15 C -0.147 4.147 16 C -0.390 4.390 17 S 0.519 5.481 18 H 0.079 0.921 19 H 0.017 0.983 20 H 0.017 0.983 21 H 0.247 0.753 22 H 0.226 0.774 23 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.776 -15.231 0.055 17.578 hybrid contribution 1.279 0.996 -0.013 1.621 sum 10.056 -14.235 0.042 17.429 Atomic orbital electron populations 1.70117 1.08101 1.28726 1.49610 1.26037 0.95852 1.03768 0.93670 0.85132 0.78406 0.76864 0.78668 1.19495 1.20576 1.18247 1.21560 0.94212 0.90534 1.53454 0.90236 1.18748 0.88442 0.83527 0.95034 1.46076 1.11925 1.04820 1.70211 1.17326 0.86600 0.82820 0.77286 1.90773 1.16694 1.85152 1.53737 1.27301 0.93496 0.98436 1.13763 1.66796 1.04158 1.33137 1.11868 1.22278 1.03715 0.84951 1.03771 1.27449 0.97244 1.06943 1.07406 1.83910 1.05206 0.98130 1.60825 0.92059 0.98342 0.98315 0.75259 0.77377 0.75428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.06 13.29 21.44 0.28 -55.77 14 2 C 0.01 0.38 5.46 84.65 0.46 0.84 14 3 Si 0.99 43.04 29.54 68.60 2.03 45.06 14 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 14 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 14 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 14 7 C -0.56 -31.47 9.28 25.60 0.24 -31.24 14 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 14 9 C 0.26 15.01 5.43 85.63 0.46 15.47 14 10 N -0.68 -32.13 5.54 -470.28 -2.61 -34.74 14 11 C 0.58 25.79 7.81 86.61 0.68 26.47 14 12 O -0.58 -29.69 16.94 -4.10 -0.07 -29.76 14 13 C -0.06 -1.98 7.46 87.26 0.65 -1.33 14 14 N -0.44 -13.41 10.24 -190.31 -1.95 -15.36 14 15 C 0.01 0.19 11.24 83.95 0.94 1.13 14 16 C -0.25 -4.00 11.09 66.91 0.74 -3.26 14 17 S 0.27 6.34 23.03 -56.49 -1.30 5.04 14 18 H 0.27 15.19 8.31 -92.71 -0.77 14.42 14 19 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 14 20 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 14 21 H 0.41 17.52 7.98 -92.71 -0.74 16.78 14 22 H 0.21 2.72 8.06 -2.91 -0.02 2.69 14 23 H 0.23 1.44 8.06 -2.91 -0.02 1.42 14 Total: -1.00 -71.10 233.94 1.06 -70.04 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.50 Total: 7.40 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.18 Total: 8.09 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -4.27 Total: -105.87 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.07 Total: -29.76 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.30 Total: 5.04 kcal Total: -71.10 1.06 -70.04 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306605466.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.814 kcal (2) G-P(sol) polarization free energy of solvation -71.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds