Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00346 * 2 1 4 4 H 1.48504 * 109.46977 * 274.98038 * 3 2 1 5 5 H 1.48501 * 109.47038 * 34.97936 * 3 2 1 6 6 H 1.48496 * 109.47314 * 154.97917 * 3 2 1 7 7 C 1.40059 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99808 * 186.14895 * 7 2 1 9 9 C 1.46371 * 119.99802 * 6.15364 * 7 2 1 10 10 O 1.21690 * 120.00140 * 353.93906 * 9 7 2 11 11 N 1.34773 * 119.99959 * 173.93513 * 9 7 2 12 12 C 1.46501 * 120.00020 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46924 * 180.02562 * 12 11 9 14 14 H 1.08994 * 110.85755 * 54.30569 * 13 12 11 15 15 C 1.54482 * 110.96768 * 290.50779 * 13 12 11 16 16 N 1.46826 * 105.44377 * 216.49452 * 15 13 12 17 17 C 1.34421 * 111.31588 * 16.96397 * 16 15 13 18 18 O 1.21278 * 124.94375 * 179.58419 * 17 16 15 19 19 C 1.51280 * 110.11707 * 359.62615 * 17 16 15 20 20 H 0.97005 * 119.99797 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00205 * 0.28134 * 11 9 7 22 22 H 1.08996 * 109.47449 * 300.00313 * 12 11 9 23 23 H 1.08998 * 109.46907 * 60.00429 * 12 11 9 24 24 H 1.09001 * 110.24651 * 335.46887 * 15 13 12 25 25 H 1.09002 * 110.24370 * 97.47023 * 15 13 12 26 26 H 0.96992 * 124.33583 * 197.00243 * 16 15 13 27 27 H 1.08999 * 110.48914 * 225.06581 * 19 17 16 28 28 H 1.09008 * 110.60154 * 102.47596 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4120 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9610 -3.6343 -0.2572 12 6 1.2348 -4.8995 -0.3921 13 6 2.2348 -6.0511 -0.5131 14 1 2.9373 -6.0442 0.3203 15 6 2.9801 -5.9964 -1.8651 16 7 3.1584 -7.3963 -2.2702 17 6 2.3384 -8.2116 -1.5848 18 8 2.2759 -9.4143 -1.7279 19 6 1.5043 -7.4106 -0.6096 20 1 -0.4850 0.8401 -0.0004 21 1 2.9310 -3.6301 -0.2516 22 1 0.6078 -5.0539 0.4860 23 1 0.6091 -4.8659 -1.2840 24 1 2.3820 -5.4632 -2.6042 25 1 3.9489 -5.5122 -1.7424 26 1 3.7876 -7.6946 -2.9454 27 1 1.4799 -7.9005 0.3638 28 1 0.4928 -7.2737 -0.9922 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306608182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = -85.031545 kcal Electronic energy + Delta-G solvation = -13649.255618 eV Core-core repulsion = 11085.589259 eV Total energy + Delta-G solvation = -2563.666359 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.28602 -37.54623 -36.36829 -33.61860 -32.42611 -31.02854 -27.86317 -26.52913 -24.61166 -20.72411 -20.63198 -19.66496 -17.55446 -17.04751 -16.26803 -15.35408 -14.95862 -14.38612 -14.33680 -14.03411 -13.43351 -13.19935 -12.82636 -12.38916 -11.98167 -11.70738 -11.17932 -11.11037 -10.90031 -10.76133 -10.49685 -10.26446 -9.88564 -9.16328 -8.89176 -7.67672 -7.59607 -6.24134 -4.68550 2.57147 3.10816 3.18375 3.21550 3.33536 4.05260 4.33382 4.40326 4.53493 4.68785 4.97258 5.18793 5.51342 5.52479 5.55445 5.73084 5.79172 5.93514 6.37054 6.43763 6.72363 6.93680 7.39414 7.85647 8.00965 8.20286 8.27213 8.98225 9.46013 10.54653 10.72867 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.077193 B = 0.005871 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.638266 B = 4767.993020 C = 5011.400255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.581 6.581 11 N -0.769 5.769 12 C 0.143 3.857 13 C -0.110 4.110 14 H 0.094 0.906 15 C 0.103 3.897 16 N -0.733 5.733 17 C 0.521 3.479 18 O -0.545 6.545 19 C -0.150 4.150 20 H 0.269 0.731 21 H 0.380 0.620 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.407 0.593 27 H 0.103 0.897 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -7.811 -2.290 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.425 5.425 12 C 0.017 3.983 13 C -0.129 4.129 14 H 0.112 0.888 15 C -0.021 4.021 16 N -0.388 5.388 17 C 0.307 3.693 18 O -0.423 6.423 19 C -0.190 4.190 20 H 0.079 0.921 21 H 0.211 0.789 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.245 0.755 27 H 0.121 0.879 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.809 -8.292 -2.271 10.376 hybrid contribution 1.251 0.792 -0.330 1.517 sum 7.060 -7.500 -2.602 10.623 Atomic orbital electron populations 1.70022 1.07094 1.27323 1.35132 1.25710 0.94595 1.00329 0.92608 0.86364 0.80222 0.81517 0.78673 1.19817 1.20466 1.18901 1.20882 0.94096 0.89575 1.53824 0.91373 1.18225 0.87149 0.82390 0.76442 1.90609 1.14112 1.86410 1.55215 1.46143 1.08532 1.05640 1.82158 1.20874 0.93103 0.83067 1.01220 1.22440 0.98334 0.94736 0.97427 0.88763 1.22267 1.01595 0.81628 0.96604 1.46306 1.41544 1.08934 1.41978 1.20963 0.80105 0.86695 0.81498 1.90732 1.68896 1.13696 1.68933 1.22358 1.00591 0.95441 1.00660 0.92072 0.78862 0.92530 0.92783 0.90227 0.89987 0.75476 0.87857 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.50 11.85 55.55 0.66 -21.84 15 2 C 0.09 2.37 5.49 -17.36 -0.10 2.28 15 3 Si 0.91 19.53 29.56 -169.99 -5.03 14.50 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.55 -14.82 9.54 -35.63 -0.34 -15.16 15 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 15 9 C 0.55 14.99 7.74 -12.99 -0.10 14.89 15 10 O -0.58 -18.20 15.05 5.20 0.08 -18.12 15 11 N -0.77 -15.45 5.44 -61.72 -0.34 -15.78 15 12 C 0.14 2.38 4.96 -4.04 -0.02 2.36 15 13 C -0.11 -1.30 3.18 -88.98 -0.28 -1.58 15 14 H 0.09 1.03 8.14 -51.93 -0.42 0.61 15 15 C 0.10 1.10 7.20 -3.09 -0.02 1.07 15 16 N -0.73 -7.92 6.24 -59.16 -0.37 -8.29 15 17 C 0.52 6.97 8.43 -10.86 -0.09 6.88 15 18 O -0.54 -9.35 18.03 5.56 0.10 -9.25 15 19 C -0.15 -1.72 6.42 -26.74 -0.17 -1.89 15 20 H 0.27 7.14 8.29 -40.82 -0.34 6.80 15 21 H 0.38 6.49 8.41 -40.82 -0.34 6.15 15 22 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.05 0.96 8.00 -51.93 -0.42 0.55 15 24 H 0.08 0.91 7.79 -51.93 -0.40 0.51 15 25 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.41 3.68 8.96 -40.82 -0.37 3.32 15 27 H 0.10 1.08 8.14 -51.93 -0.42 0.65 15 28 H 0.11 1.22 7.90 -51.92 -0.41 0.81 15 LS Contribution 250.24 15.07 3.77 3.77 Total: -1.00 -35.14 250.24 -5.42 -40.57 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.18 Total: 5.60 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.12 Total: 8.84 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.05 Total: -45.92 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.18 Total: -27.37 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.14 -5.42 -40.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306608182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.465 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds