Wall clock time and date at job start Sun Mar 29 2020 21:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86801 * 120.00346 * 2 1 4 4 H 1.48504 * 109.46977 * 274.98038 * 3 2 1 5 5 H 1.48501 * 109.47038 * 34.97936 * 3 2 1 6 6 H 1.48496 * 109.47314 * 154.97917 * 3 2 1 7 7 C 1.40059 * 119.99970 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99808 * 186.14895 * 7 2 1 9 9 C 1.46371 * 119.99802 * 6.15364 * 7 2 1 10 10 O 1.21690 * 120.00140 * 353.93906 * 9 7 2 11 11 N 1.34773 * 119.99959 * 173.93513 * 9 7 2 12 12 C 1.46501 * 120.00020 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46924 * 180.02562 * 12 11 9 14 14 H 1.08994 * 110.85755 * 54.30569 * 13 12 11 15 15 C 1.54482 * 110.96768 * 290.50779 * 13 12 11 16 16 N 1.46826 * 105.44377 * 216.49452 * 15 13 12 17 17 C 1.34421 * 111.31588 * 16.96397 * 16 15 13 18 18 O 1.21278 * 124.94375 * 179.58419 * 17 16 15 19 19 C 1.51280 * 110.11707 * 359.62615 * 17 16 15 20 20 H 0.97005 * 119.99797 * 0.02562 * 1 2 3 21 21 H 0.96997 * 120.00205 * 0.28134 * 11 9 7 22 22 H 1.08996 * 109.47449 * 300.00313 * 12 11 9 23 23 H 1.08998 * 109.46907 * 60.00429 * 12 11 9 24 24 H 1.09001 * 110.24651 * 335.46887 * 15 13 12 25 25 H 1.09002 * 110.24370 * 97.47023 * 15 13 12 26 26 H 0.96992 * 124.33583 * 197.00243 * 16 15 13 27 27 H 1.08999 * 110.48914 * 225.06581 * 19 17 16 28 28 H 1.09008 * 110.60154 * 102.47596 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5869 1.4120 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4828 -0.1368 11 7 1.9610 -3.6343 -0.2572 12 6 1.2348 -4.8995 -0.3921 13 6 2.2348 -6.0511 -0.5131 14 1 2.9373 -6.0442 0.3203 15 6 2.9801 -5.9964 -1.8651 16 7 3.1584 -7.3963 -2.2702 17 6 2.3384 -8.2116 -1.5848 18 8 2.2759 -9.4143 -1.7279 19 6 1.5043 -7.4106 -0.6096 20 1 -0.4850 0.8401 -0.0004 21 1 2.9310 -3.6301 -0.2516 22 1 0.6078 -5.0539 0.4860 23 1 0.6091 -4.8659 -1.2840 24 1 2.3820 -5.4632 -2.6042 25 1 3.9489 -5.5122 -1.7424 26 1 3.7876 -7.6946 -2.9454 27 1 1.4799 -7.9005 0.3638 28 1 0.4928 -7.2737 -0.9922 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306608182.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:20 Heat of formation + Delta-G solvation = -114.443413 kcal Electronic energy + Delta-G solvation = -13650.531012 eV Core-core repulsion = 11085.589259 eV Total energy + Delta-G solvation = -2564.941753 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.33809 -39.34737 -37.70352 -35.22656 -34.42729 -32.37271 -29.22192 -28.13413 -26.05919 -22.04246 -21.77320 -21.27041 -19.19740 -18.30490 -17.46731 -17.31715 -16.03263 -15.95970 -15.77150 -15.63381 -14.58333 -14.48928 -14.22322 -14.04891 -13.28107 -13.25571 -12.91362 -12.70940 -12.53014 -12.06398 -11.99082 -11.93330 -11.02862 -10.89662 -10.12497 -9.81972 -9.42077 -8.26096 -6.79882 1.44369 1.44591 1.52001 1.60569 2.27635 2.41343 2.51986 3.05913 3.35960 3.56641 3.68959 3.87542 4.09443 4.41064 4.61538 4.66660 4.81904 4.82996 5.00896 5.21746 5.37432 5.79763 5.93210 5.99173 6.30594 6.31872 6.92061 7.21842 7.62081 8.54343 8.72003 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.077193 B = 0.005871 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.638266 B = 4767.993020 C = 5011.400255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.538 3.462 10 O -0.635 6.635 11 N -0.751 5.751 12 C 0.146 3.854 13 C -0.094 4.094 14 H 0.114 0.886 15 C 0.106 3.894 16 N -0.718 5.718 17 C 0.518 3.482 18 O -0.587 6.587 19 C -0.145 4.145 20 H 0.273 0.727 21 H 0.399 0.601 22 H 0.042 0.958 23 H 0.039 0.961 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.418 0.582 27 H 0.117 0.883 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -7.278 -2.316 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.816 3.184 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.609 4.609 8 H 0.109 0.891 9 C 0.341 3.659 10 O -0.522 6.522 11 N -0.406 5.406 12 C 0.021 3.979 13 C -0.113 4.113 14 H 0.132 0.868 15 C -0.018 4.018 16 N -0.372 5.372 17 C 0.305 3.695 18 O -0.468 6.468 19 C -0.186 4.186 20 H 0.083 0.917 21 H 0.233 0.767 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.126 0.874 26 H 0.257 0.743 27 H 0.135 0.865 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.166 -7.786 -2.314 11.518 hybrid contribution 0.535 0.570 -0.334 0.850 sum 8.701 -7.216 -2.648 11.610 Atomic orbital electron populations 1.70193 1.09563 1.28834 1.36705 1.26956 0.95438 1.04977 0.91310 0.85033 0.79006 0.75377 0.79031 1.18940 1.20216 1.16977 1.21454 0.95343 0.90240 1.53888 0.89110 1.18584 0.86721 0.84424 0.76129 1.90567 1.16419 1.87645 1.57577 1.45709 1.09414 1.05231 1.80277 1.20914 0.93973 0.83130 0.99897 1.22249 0.97461 0.92584 0.99051 0.86767 1.22295 1.02672 0.81375 0.95496 1.46244 1.40835 1.08659 1.41478 1.21179 0.80284 0.86259 0.81768 1.90716 1.70236 1.15473 1.70355 1.22348 1.00328 0.94837 1.01080 0.91702 0.76715 0.93992 0.94220 0.90912 0.87363 0.74262 0.86452 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.26 11.85 21.84 0.26 -49.01 15 2 C 0.03 1.52 5.49 85.31 0.47 1.99 15 3 Si 1.00 39.36 29.56 68.60 2.03 41.39 15 4 H -0.26 -10.03 7.11 99.48 0.71 -9.33 15 5 H -0.28 -10.73 7.11 99.48 0.71 -10.03 15 6 H -0.25 -8.93 7.11 99.48 0.71 -8.22 15 7 C -0.57 -30.71 9.54 24.83 0.24 -30.47 15 8 H 0.09 4.28 7.85 -2.91 -0.02 4.26 15 9 C 0.54 29.31 7.74 86.36 0.67 29.98 15 10 O -0.63 -40.99 15.05 -4.32 -0.06 -41.05 15 11 N -0.75 -29.43 5.44 -467.41 -2.54 -31.97 15 12 C 0.15 4.75 4.96 86.38 0.43 5.18 15 13 C -0.09 -2.00 3.18 -9.73 -0.03 -2.04 15 14 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 15 C 0.11 1.94 7.20 86.82 0.63 2.57 15 16 N -0.72 -13.81 6.24 -459.66 -2.87 -16.68 15 17 C 0.52 13.03 8.43 87.90 0.74 13.77 15 18 O -0.59 -19.67 18.03 -3.02 -0.05 -19.73 15 19 C -0.15 -3.09 6.42 30.59 0.20 -2.89 15 20 H 0.27 14.84 8.29 -92.70 -0.77 14.07 15 21 H 0.40 12.65 8.41 -92.71 -0.78 11.87 15 22 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.04 1.42 8.00 -2.39 -0.02 1.40 15 24 H 0.07 1.51 7.79 -2.39 -0.02 1.49 15 25 H 0.11 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.42 6.53 8.96 -92.71 -0.83 5.70 15 27 H 0.12 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.11 2.36 7.90 -2.38 -0.02 2.34 15 Total: -1.00 -77.88 250.24 -0.33 -78.21 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.42 Total: 20.77 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 3.33 Total: 18.07 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -5.15 Total: -97.66 kcal Atomic # 8 Polarization: -60.66 SS G_CDS: -0.12 Total: -60.78 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -77.88 -0.33 -78.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306608182.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.234 kcal (2) G-P(sol) polarization free energy of solvation -77.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds