Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47019 * 239.99763 * 3 2 1 5 5 H 1.48496 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46769 * 119.99727 * 3 2 1 7 7 C 1.37878 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99596 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46653 * 179.97438 * 9 7 2 11 11 C 1.39245 * 119.99794 * 180.02562 * 10 9 7 12 12 C 1.39440 * 120.87124 * 0.24808 * 11 10 9 13 13 C 1.37904 * 119.08454 * 180.31937 * 12 11 10 14 14 N 1.31988 * 120.86484 * 359.70022 * 13 12 11 15 15 C 1.31995 * 121.91586 * 0.02562 * 14 13 12 16 16 C 1.38014 * 120.82381 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.47442 * 179.97438 * 16 15 14 18 18 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47368 * 60.00126 * 9 7 2 20 20 H 1.08998 * 109.47403 * 299.99448 * 9 7 2 21 21 H 0.96996 * 120.00084 * 359.97438 * 10 9 7 22 22 H 1.08010 * 120.45676 * 0.02562 * 12 11 10 23 23 H 1.08002 * 119.56974 * 179.72353 * 13 12 11 24 24 H 1.08003 * 119.59029 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7388 -4.9254 0.0000 12 6 0.3719 -5.2010 -0.0057 13 6 -0.0471 -6.5148 0.0006 14 7 0.8266 -7.5041 0.0061 15 6 2.1283 -7.2856 0.0062 16 6 2.6295 -5.9996 0.0011 17 17 4.3432 -5.7226 0.0019 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 3.1566 -3.4354 0.0002 22 1 -0.3488 -4.3965 -0.0103 23 1 -1.1040 -6.7372 0.0008 24 1 2.8098 -8.1234 0.0103 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306624713.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = 16.065559 kcal Electronic energy + Delta-G solvation = -11371.916737 eV Core-core repulsion = 9117.510348 eV Total energy + Delta-G solvation = -2254.406390 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.71777 -36.26554 -35.74706 -32.92000 -30.59305 -30.11097 -26.83808 -23.70593 -22.65990 -21.34282 -17.84358 -16.49959 -16.01914 -15.61254 -14.74828 -14.15497 -13.99126 -13.50808 -13.36123 -12.75961 -12.26917 -11.65926 -11.40898 -11.06337 -11.05971 -10.88568 -10.33945 -10.14482 -9.56644 -9.14012 -8.70163 -8.64867 -7.11934 -6.32161 -4.38590 1.41286 1.92655 2.48570 3.18449 3.23315 3.25118 4.04436 4.18603 4.30557 4.82453 5.05485 5.10604 5.43170 5.67864 6.01059 6.16489 6.33830 6.82023 7.00091 7.21137 7.45395 7.76762 7.93757 8.35709 8.37176 8.70145 9.28316 10.78187 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.042592 B = 0.008005 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.242881 B = 3497.079040 C = 4139.173794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.246 3.754 10 N -0.703 5.703 11 C 0.272 3.728 12 C -0.245 4.245 13 C 0.136 3.864 14 N -0.535 5.535 15 C 0.150 3.850 16 C -0.187 4.187 17 Cl -0.076 7.076 18 H 0.268 0.732 19 H 0.027 0.973 20 H 0.028 0.972 21 H 0.399 0.601 22 H 0.142 0.858 23 H 0.154 0.846 24 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -9.009 0.000 9.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.324 5.324 11 C 0.150 3.850 12 C -0.271 4.271 13 C -0.018 4.018 14 N -0.249 5.249 15 C -0.008 4.008 16 C -0.223 4.223 17 Cl -0.048 7.048 18 H 0.078 0.922 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.235 0.765 22 H 0.160 0.840 23 H 0.171 0.829 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.683 -9.451 0.004 9.824 hybrid contribution 1.231 2.011 -0.003 2.358 sum 3.914 -7.440 0.001 8.406 Atomic orbital electron populations 1.69922 1.06092 1.27720 1.48715 1.24917 0.94973 0.99524 0.94353 0.86427 0.79452 0.81966 0.78880 1.19957 1.20919 1.19951 1.21106 0.93412 0.90172 1.53600 0.91868 1.19297 0.88576 0.82404 0.97210 1.45723 1.10767 1.02166 1.73705 1.18073 0.92323 0.85687 0.88878 1.21706 0.93825 0.99020 1.12577 1.22447 0.99224 0.87902 0.92256 1.67817 1.01743 1.35627 1.19745 1.22308 0.92174 0.93304 0.92979 1.21467 0.84450 0.95205 1.21132 1.98309 1.12245 1.96582 1.97647 0.92222 0.95477 0.95466 0.76520 0.83982 0.82910 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.67 13.29 55.43 0.74 -23.93 14 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 14 3 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 14 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 14 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 14 7 C -0.54 -14.34 9.28 -34.44 -0.32 -14.66 14 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 14 9 C 0.25 5.97 4.70 -5.19 -0.02 5.94 14 10 N -0.70 -14.61 5.68 -59.61 -0.34 -14.95 14 11 C 0.27 5.13 6.69 -83.56 -0.56 4.57 14 12 C -0.25 -4.33 9.38 -39.26 -0.37 -4.69 14 13 C 0.14 2.12 11.17 -17.61 -0.20 1.92 14 14 N -0.53 -8.72 10.36 -13.32 -0.14 -8.86 14 15 C 0.15 2.33 10.98 -17.56 -0.19 2.13 14 16 C -0.19 -3.15 6.36 -39.18 -0.25 -3.40 14 17 Cl -0.08 -1.16 27.76 -51.86 -1.44 -2.60 14 18 H 0.27 7.05 8.31 -40.82 -0.34 6.71 14 19 H 0.03 0.70 7.98 -51.93 -0.41 0.29 14 20 H 0.03 0.70 8.01 -51.93 -0.42 0.29 14 21 H 0.40 8.03 7.13 -40.82 -0.29 7.74 14 22 H 0.14 2.55 6.90 -52.48 -0.36 2.19 14 23 H 0.15 1.89 8.06 -52.49 -0.42 1.47 14 24 H 0.15 1.93 8.06 -52.48 -0.42 1.51 14 LS Contribution 234.01 15.07 3.53 3.53 Total: -1.00 -27.33 234.01 -6.54 -33.87 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -1.86 Total: 4.07 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.01 Total: -6.52 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.26 Total: -47.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.44 Total: -2.60 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.33 -6.54 -33.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306624713.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.940 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds