Wall clock time and date at job start Sun Mar 29 2020 21:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47019 * 239.99763 * 3 2 1 5 5 H 1.48496 * 109.47282 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46769 * 119.99727 * 3 2 1 7 7 C 1.37878 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99596 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46653 * 179.97438 * 9 7 2 11 11 C 1.39245 * 119.99794 * 180.02562 * 10 9 7 12 12 C 1.39440 * 120.87124 * 0.24808 * 11 10 9 13 13 C 1.37904 * 119.08454 * 180.31937 * 12 11 10 14 14 N 1.31988 * 120.86484 * 359.70022 * 13 12 11 15 15 C 1.31995 * 121.91586 * 0.02562 * 14 13 12 16 16 C 1.38014 * 120.82381 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 120.47442 * 179.97438 * 16 15 14 18 18 H 0.97001 * 119.99694 * 359.97438 * 1 2 3 19 19 H 1.08996 * 109.47368 * 60.00126 * 9 7 2 20 20 H 1.08998 * 109.47403 * 299.99448 * 9 7 2 21 21 H 0.96996 * 120.00084 * 359.97438 * 10 9 7 22 22 H 1.08010 * 120.45676 * 0.02562 * 12 11 10 23 23 H 1.08002 * 119.56974 * 179.72353 * 13 12 11 24 24 H 1.08003 * 119.59029 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7388 -4.9254 0.0000 12 6 0.3719 -5.2010 -0.0057 13 6 -0.0471 -6.5148 0.0006 14 7 0.8266 -7.5041 0.0061 15 6 2.1283 -7.2856 0.0062 16 6 2.6295 -5.9996 0.0011 17 17 4.3432 -5.7226 0.0019 18 1 -0.4850 0.8401 0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 3.1566 -3.4354 0.0002 22 1 -0.3488 -4.3965 -0.0103 23 1 -1.1040 -6.7372 0.0008 24 1 2.8098 -8.1234 0.0103 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306624713.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:08 Heat of formation + Delta-G solvation = -1.173048 kcal Electronic energy + Delta-G solvation = -11372.664259 eV Core-core repulsion = 9117.510348 eV Total energy + Delta-G solvation = -2255.153912 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.07600 -37.60546 -37.28906 -34.85161 -31.90888 -31.71199 -28.64914 -25.38519 -24.09383 -22.91405 -19.50099 -18.02986 -17.71085 -16.99718 -16.52222 -15.63231 -15.42494 -15.04025 -14.78215 -14.48250 -14.12205 -12.94507 -12.93323 -12.81651 -12.76320 -12.20698 -12.16074 -11.75536 -11.52648 -10.69504 -10.47301 -9.94263 -8.68406 -8.34794 -6.48756 0.10854 0.52360 1.17800 1.40539 1.42344 1.50731 2.29338 2.60216 2.86177 3.01144 3.62500 3.80596 4.05954 4.32372 4.72604 4.81795 4.89201 5.04966 5.20723 5.44781 5.65262 5.80707 6.20586 6.57412 6.85453 7.05545 7.23277 8.76205 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.042592 B = 0.008005 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.242881 B = 3497.079040 C = 4139.173794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.564 4.564 8 H 0.068 0.932 9 C 0.267 3.733 10 N -0.712 5.712 11 C 0.249 3.751 12 C -0.259 4.259 13 C 0.146 3.854 14 N -0.537 5.537 15 C 0.155 3.845 16 C -0.188 4.188 17 Cl -0.062 7.062 18 H 0.271 0.729 19 H 0.004 0.996 20 H 0.004 0.996 21 H 0.401 0.599 22 H 0.131 0.869 23 H 0.187 0.813 24 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -9.742 0.003 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.602 4.602 8 H 0.086 0.914 9 C 0.144 3.856 10 N -0.336 5.336 11 C 0.130 3.870 12 C -0.285 4.285 13 C -0.008 4.008 14 N -0.251 5.251 15 C -0.002 4.002 16 C -0.224 4.224 17 Cl -0.034 7.034 18 H 0.080 0.920 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.237 0.763 22 H 0.149 0.851 23 H 0.204 0.796 24 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.508 -10.236 0.007 10.820 hybrid contribution 0.965 2.085 -0.004 2.298 sum 4.473 -8.151 0.003 9.297 Atomic orbital electron populations 1.70037 1.07613 1.28709 1.49515 1.25830 0.95815 1.03135 0.93766 0.85360 0.78186 0.77486 0.79180 1.19218 1.20467 1.19209 1.21493 0.93901 0.91255 1.53516 0.91399 1.18772 0.88530 0.83294 0.94965 1.45354 1.10053 1.02224 1.75937 1.18368 0.93364 0.85321 0.89905 1.21803 0.93395 0.99879 1.13474 1.22921 1.00818 0.86734 0.90340 1.67944 1.02171 1.35593 1.19364 1.22831 0.92449 0.93619 0.91310 1.21592 0.85110 0.95084 1.20569 1.98314 1.10896 1.96585 1.97579 0.92031 0.97799 0.97795 0.76328 0.85130 0.79571 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 13.29 21.45 0.28 -51.73 14 2 C 0.02 0.82 5.46 84.65 0.46 1.28 14 3 Si 0.97 41.65 29.54 68.60 2.03 43.68 14 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 14 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 14 6 H -0.27 -11.06 7.11 99.48 0.71 -10.35 14 7 C -0.56 -30.09 9.28 25.60 0.24 -29.85 14 8 H 0.07 3.47 7.60 -2.91 -0.02 3.44 14 9 C 0.27 13.39 4.70 85.63 0.40 13.79 14 10 N -0.71 -30.09 5.68 -342.51 -1.94 -32.04 14 11 C 0.25 9.36 6.69 38.57 0.26 9.61 14 12 C -0.26 -9.13 9.38 22.48 0.21 -8.92 14 13 C 0.15 4.29 11.17 84.59 0.94 5.23 14 14 N -0.54 -16.09 10.36 -196.06 -2.03 -18.12 14 15 C 0.15 4.41 10.98 84.61 0.93 5.34 14 16 C -0.19 -6.08 6.36 22.53 0.14 -5.93 14 17 Cl -0.06 -1.80 27.76 -2.72 -0.08 -1.87 14 18 H 0.27 14.37 8.31 -92.71 -0.77 13.60 14 19 H 0.00 0.22 7.98 -2.39 -0.02 0.21 14 20 H 0.00 0.23 8.01 -2.39 -0.02 0.21 14 21 H 0.40 16.24 7.13 -92.71 -0.66 15.58 14 22 H 0.13 4.86 6.90 -2.91 -0.02 4.84 14 23 H 0.19 4.10 8.06 -2.91 -0.02 4.07 14 24 H 0.19 3.99 8.06 -2.91 -0.02 3.97 14 Total: -1.00 -57.68 234.01 2.41 -55.27 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.56 Total: 14.26 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 3.59 Total: -9.45 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -3.69 Total: -101.88 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.87 kcal Total: -57.68 2.41 -55.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306624713.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.096 kcal (2) G-P(sol) polarization free energy of solvation -57.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds