Wall clock time and date at job start Sun Mar 29 2020 21:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.04215 * 2 1 4 4 C 1.53820 * 109.04820 * 241.02117 * 2 1 3 5 5 C 1.54168 * 111.97015 * 198.56318 * 4 2 1 6 6 C 1.50755 * 112.61124 * 318.49321 * 5 4 2 7 7 C 1.54426 * 109.02907 * 93.01747 * 6 5 4 8 8 N 1.39782 * 111.76902 * 282.59463 * 7 6 5 9 9 C 1.46898 * 110.99990 * 189.12906 * 8 7 6 10 10 C 1.52992 * 109.47518 * 66.04012 * 9 8 7 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 C 1.47628 * 114.76039 * 62.26919 * 8 7 6 20 20 H 1.08998 * 109.47094 * 178.97488 * 1 2 3 21 21 H 1.08999 * 109.47317 * 298.97363 * 1 2 3 22 22 H 1.09001 * 109.47355 * 58.97586 * 1 2 3 23 23 H 1.09003 * 108.98193 * 77.92285 * 4 2 1 24 24 H 1.09000 * 108.92178 * 319.16088 * 4 2 1 25 25 H 1.09002 * 108.85796 * 197.68153 * 5 4 2 26 26 H 1.08997 * 108.77412 * 79.24304 * 5 4 2 27 27 H 1.09003 * 109.54529 * 333.15280 * 6 5 4 28 28 H 1.09000 * 109.54445 * 212.88124 * 6 5 4 29 29 H 1.08997 * 109.02255 * 162.00056 * 7 6 5 30 30 H 1.09003 * 108.96137 * 43.13456 * 7 6 5 31 31 H 1.09004 * 109.46827 * 306.03696 * 9 8 7 32 32 H 1.09005 * 109.47082 * 186.04234 * 9 8 7 33 33 H 1.09004 * 109.47330 * 59.99991 * 10 9 8 34 34 H 1.08997 * 109.47279 * 300.00478 * 10 9 8 35 35 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.74528 * 36.84064 * 19 8 7 37 37 H 1.09001 * 109.74371 * 157.56266 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0303 0.0000 4 6 2.0320 -0.7044 -1.2719 5 6 3.5013 -1.1524 -1.1414 6 6 4.3653 -0.1171 -0.4672 7 6 4.4177 -0.4140 1.0473 8 7 3.2493 -0.0053 1.6965 9 6 3.3989 -0.0940 3.1552 10 6 4.4478 0.9169 3.6227 11 6 4.6008 0.8263 5.1192 12 1 4.0087 0.1187 5.6807 13 6 5.4959 1.6474 5.7717 14 7 6.2200 2.5059 5.0874 15 14 5.6860 1.5346 7.6265 16 1 4.7687 0.4935 8.1557 17 1 7.0879 1.1754 7.9595 18 1 5.3520 2.8455 8.2390 19 6 2.0208 -0.6902 1.2480 20 1 -0.3633 -1.0275 -0.0184 21 1 -0.3634 0.4978 0.8990 22 1 -0.3634 0.5297 -0.8807 23 1 1.9438 -0.0192 -2.1150 24 1 1.4100 -1.5795 -1.4603 25 1 3.8994 -1.3493 -2.1369 26 1 3.5369 -2.0736 -0.5599 27 1 3.9413 0.8738 -0.6301 28 1 5.3726 -0.1568 -0.8817 29 1 5.2682 0.1104 1.4829 30 1 4.5488 -1.4862 1.1937 31 1 3.7174 -1.1003 3.4272 32 1 2.4439 0.1262 3.6324 33 1 4.1292 1.9232 3.3507 34 1 5.4027 0.6968 3.1455 35 1 6.8494 3.0838 5.5465 36 1 2.2408 -1.7349 1.0286 37 1 1.2600 -0.6289 2.0261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306687038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:57 Heat of formation + Delta-G solvation = -20.559256 kcal Electronic energy + Delta-G solvation = -14566.652563 eV Core-core repulsion = 12342.874033 eV Total energy + Delta-G solvation = -2223.778531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.22187 -35.18567 -33.09402 -32.69755 -29.58406 -27.62442 -25.56926 -24.44320 -22.94572 -20.95445 -19.79632 -18.78770 -16.50941 -15.40213 -15.04890 -14.79309 -14.48521 -14.29853 -13.39160 -12.88297 -12.84314 -12.64527 -12.25502 -12.05975 -11.65580 -11.34490 -11.04676 -10.94649 -10.82112 -10.60505 -10.44599 -10.37357 -10.03097 -9.95149 -9.74294 -9.25870 -9.05707 -8.29778 -7.48500 -5.97074 -3.99094 3.32770 3.40051 3.44151 4.41984 4.59207 4.92597 4.99780 5.12439 5.27954 5.38602 5.41351 5.58407 5.68209 5.78767 5.84659 5.88815 5.94678 5.99530 6.14506 6.16144 6.24078 6.33923 6.39704 6.43360 6.49157 6.64128 6.68660 6.73498 7.04454 7.61666 7.81903 7.88714 8.11251 8.17199 8.48408 9.08636 9.64345 11.14391 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051030 B = 0.006523 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.560089 B = 4291.782567 C = 4595.599028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.119 4.119 6 C -0.119 4.119 7 C 0.073 3.927 8 N -0.555 5.555 9 C 0.069 3.931 10 C 0.026 3.974 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.070 3.930 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.008 0.992 31 H 0.017 0.983 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.032 0.968 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.606 -6.200 -11.366 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.102 0.898 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.056 4.056 8 N -0.279 5.279 9 C -0.058 4.058 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.058 4.058 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.519 -5.632 -11.468 14.824 hybrid contribution 0.309 -0.848 1.209 1.509 sum -7.210 -6.480 -10.258 14.114 Atomic orbital electron populations 1.21895 0.95726 1.01118 1.01518 1.21039 0.94576 1.01436 0.94040 0.89776 1.21959 0.95631 0.99608 0.97510 1.21425 0.95088 0.99142 0.99988 1.21500 0.99031 0.99845 0.95300 1.20996 0.93931 0.97030 0.93676 1.58854 1.02511 1.59438 1.07102 1.22310 1.00975 0.98814 0.83654 1.19142 0.92740 0.94197 0.95058 1.21249 1.21994 1.20024 0.92675 0.92787 1.24998 0.95775 0.95373 0.98212 1.69988 1.25072 1.22901 1.35328 0.86550 0.77824 0.77867 0.85829 1.19796 1.21054 1.20996 1.21848 0.92446 0.95080 0.96399 0.93257 0.92530 0.93115 0.92617 0.92816 0.92875 0.92704 0.90859 0.92025 0.89823 0.97404 0.96453 0.92247 0.95739 0.96445 0.93088 0.95012 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.84 37.16 0.33 -1.30 16 2 C -0.09 -1.22 2.28 -91.29 -0.21 -1.43 16 3 H 0.08 1.27 7.26 -51.93 -0.38 0.90 16 4 C -0.11 -1.29 5.30 -25.69 -0.14 -1.43 16 5 C -0.12 -1.49 5.32 -27.25 -0.14 -1.63 16 6 C -0.12 -1.72 5.65 -27.11 -0.15 -1.88 16 7 C 0.07 1.30 4.82 -6.75 -0.03 1.27 16 8 N -0.56 -10.37 3.95 -240.01 -0.95 -11.32 16 9 C 0.07 1.49 4.89 -3.83 -0.02 1.47 16 10 C 0.03 0.69 4.88 -27.89 -0.14 0.55 16 11 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 C 0.07 1.07 4.89 -4.52 -0.02 1.05 16 20 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 21 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 27 H 0.07 1.11 7.11 -51.93 -0.37 0.74 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.69 5.89 -51.93 -0.31 1.39 16 30 H 0.01 0.14 7.54 -51.93 -0.39 -0.25 16 31 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 32 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.48 6.35 -51.93 -0.33 0.15 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.03 0.48 6.66 -51.93 -0.35 0.13 16 37 H 0.07 1.05 7.04 -51.93 -0.37 0.68 16 LS Contribution 280.57 15.07 4.23 4.23 Total: -1.00 -29.63 280.57 -8.49 -38.12 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -6.55 Total: -4.40 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.93 Total: -17.03 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.21 Total: -37.77 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.63 -8.49 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306687038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.562 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds