Wall clock time and date at job start Sun Mar 29 2020 21:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.04215 * 2 1 4 4 C 1.53820 * 109.04820 * 241.02117 * 2 1 3 5 5 C 1.54168 * 111.97015 * 198.56318 * 4 2 1 6 6 C 1.50755 * 112.61124 * 318.49321 * 5 4 2 7 7 C 1.54426 * 109.02907 * 93.01747 * 6 5 4 8 8 N 1.39782 * 111.76902 * 282.59463 * 7 6 5 9 9 C 1.46898 * 110.99990 * 189.12906 * 8 7 6 10 10 C 1.52992 * 109.47518 * 66.04012 * 9 8 7 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 C 1.47628 * 114.76039 * 62.26919 * 8 7 6 20 20 H 1.08998 * 109.47094 * 178.97488 * 1 2 3 21 21 H 1.08999 * 109.47317 * 298.97363 * 1 2 3 22 22 H 1.09001 * 109.47355 * 58.97586 * 1 2 3 23 23 H 1.09003 * 108.98193 * 77.92285 * 4 2 1 24 24 H 1.09000 * 108.92178 * 319.16088 * 4 2 1 25 25 H 1.09002 * 108.85796 * 197.68153 * 5 4 2 26 26 H 1.08997 * 108.77412 * 79.24304 * 5 4 2 27 27 H 1.09003 * 109.54529 * 333.15280 * 6 5 4 28 28 H 1.09000 * 109.54445 * 212.88124 * 6 5 4 29 29 H 1.08997 * 109.02255 * 162.00056 * 7 6 5 30 30 H 1.09003 * 108.96137 * 43.13456 * 7 6 5 31 31 H 1.09004 * 109.46827 * 306.03696 * 9 8 7 32 32 H 1.09005 * 109.47082 * 186.04234 * 9 8 7 33 33 H 1.09004 * 109.47330 * 59.99991 * 10 9 8 34 34 H 1.08997 * 109.47279 * 300.00478 * 10 9 8 35 35 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.74528 * 36.84064 * 19 8 7 37 37 H 1.09001 * 109.74371 * 157.56266 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8856 1.0303 0.0000 4 6 2.0320 -0.7044 -1.2719 5 6 3.5013 -1.1524 -1.1414 6 6 4.3653 -0.1171 -0.4672 7 6 4.4177 -0.4140 1.0473 8 7 3.2493 -0.0053 1.6965 9 6 3.3989 -0.0940 3.1552 10 6 4.4478 0.9169 3.6227 11 6 4.6008 0.8263 5.1192 12 1 4.0087 0.1187 5.6807 13 6 5.4959 1.6474 5.7717 14 7 6.2200 2.5059 5.0874 15 14 5.6860 1.5346 7.6265 16 1 4.7687 0.4935 8.1557 17 1 7.0879 1.1754 7.9595 18 1 5.3520 2.8455 8.2390 19 6 2.0208 -0.6902 1.2480 20 1 -0.3633 -1.0275 -0.0184 21 1 -0.3634 0.4978 0.8990 22 1 -0.3634 0.5297 -0.8807 23 1 1.9438 -0.0192 -2.1150 24 1 1.4100 -1.5795 -1.4603 25 1 3.8994 -1.3493 -2.1369 26 1 3.5369 -2.0736 -0.5599 27 1 3.9413 0.8738 -0.6301 28 1 5.3726 -0.1568 -0.8817 29 1 5.2682 0.1104 1.4829 30 1 4.5488 -1.4862 1.1937 31 1 3.7174 -1.1003 3.4272 32 1 2.4439 0.1262 3.6324 33 1 4.1292 1.9232 3.3507 34 1 5.4027 0.6968 3.1455 35 1 6.8494 3.0838 5.5465 36 1 2.2408 -1.7349 1.0286 37 1 1.2600 -0.6289 2.0261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306687038.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:56 Heat of formation + Delta-G solvation = -37.994167 kcal Electronic energy + Delta-G solvation = -14567.408598 eV Core-core repulsion = 12342.874033 eV Total energy + Delta-G solvation = -2224.534565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54709 -36.63829 -34.92162 -34.08822 -31.51173 -28.77618 -27.20782 -25.86181 -24.47178 -22.45076 -21.39756 -19.88747 -18.64327 -16.79428 -16.66409 -16.28931 -15.91177 -15.81846 -14.77172 -14.44246 -14.21111 -13.90882 -13.71479 -13.40941 -13.29297 -12.86179 -12.78514 -12.46121 -12.25088 -12.04375 -11.87771 -11.74021 -11.51189 -11.21709 -11.13796 -11.06051 -11.03054 -10.53572 -9.00613 -8.20726 -6.32218 1.39607 1.40256 1.53657 2.39899 3.11019 3.12709 3.85284 3.93193 4.05750 4.14442 4.22678 4.42243 4.44997 4.59334 4.63616 4.68432 4.77783 4.85626 4.90258 4.95930 5.03488 5.06474 5.19474 5.23115 5.26642 5.31730 5.44201 5.47547 5.52659 5.64499 5.68972 5.79882 6.16828 6.38864 6.68470 6.85723 7.36903 8.91780 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051030 B = 0.006523 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.560089 B = 4291.782567 C = 4595.599028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.061 0.939 4 C -0.106 4.106 5 C -0.117 4.117 6 C -0.111 4.111 7 C 0.074 3.926 8 N -0.564 5.564 9 C 0.084 3.916 10 C 0.036 3.964 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.071 3.929 20 H 0.062 0.938 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.009 0.991 31 H 0.015 0.985 32 H 0.063 0.937 33 H -0.009 1.009 34 H -0.006 1.006 35 H 0.264 0.736 36 H 0.040 0.960 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -7.333 -11.776 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.080 0.920 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.149 4.149 7 C -0.056 4.056 8 N -0.289 5.289 9 C -0.043 4.043 10 C -0.002 4.002 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.056 4.056 20 H 0.081 0.919 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.696 -6.777 -11.896 16.219 hybrid contribution 0.691 -0.475 1.300 1.547 sum -8.005 -7.251 -10.596 15.131 Atomic orbital electron populations 1.21844 0.93821 1.02168 1.01902 1.20989 0.96151 1.00005 0.93779 0.92010 1.21947 0.95143 1.00430 0.96810 1.21398 0.95366 0.97874 1.00762 1.21441 1.00405 1.00243 0.92770 1.20985 0.92406 0.96419 0.95804 1.58824 1.04086 1.60753 1.05188 1.21968 0.99318 0.96964 0.86061 1.18959 0.93058 0.93718 0.94452 1.21665 1.22399 1.20403 0.93846 0.92233 1.25988 0.95174 0.94727 1.03849 1.70126 1.25707 1.23703 1.37717 0.85358 0.78141 0.78314 0.78964 1.18561 1.20299 1.20224 1.21963 0.90632 0.95494 0.97491 0.91874 0.93254 0.91675 0.91361 0.91016 0.90623 0.93161 0.91684 0.90895 0.93452 0.97299 0.96634 0.91852 0.99047 0.98820 0.92739 0.94141 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.84 71.98 0.64 -2.15 16 2 C -0.09 -2.24 2.28 -11.23 -0.03 -2.27 16 3 H 0.06 1.83 7.26 -2.39 -0.02 1.81 16 4 C -0.11 -2.17 5.30 31.27 0.17 -2.01 16 5 C -0.12 -2.63 5.32 30.26 0.16 -2.47 16 6 C -0.11 -3.14 5.65 30.35 0.17 -2.97 16 7 C 0.07 2.67 4.82 88.07 0.42 3.10 16 8 N -0.56 -21.43 3.95 -913.25 -3.61 -25.04 16 9 C 0.08 3.74 4.89 86.30 0.42 4.16 16 10 C 0.04 1.97 4.88 29.85 0.15 2.12 16 11 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.93 -58.12 13.29 21.45 0.28 -57.83 16 15 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 C 0.07 2.10 4.89 85.45 0.42 2.52 16 20 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 21 H 0.05 1.05 8.04 -2.39 -0.02 1.03 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 24 H 0.07 1.26 7.95 -2.39 -0.02 1.24 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.05 1.20 6.57 -2.39 -0.02 1.18 16 27 H 0.06 1.95 7.11 -2.39 -0.02 1.94 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 2.04 5.89 -2.39 -0.01 2.02 16 30 H 0.01 0.32 7.54 -2.39 -0.02 0.31 16 31 H 0.02 0.69 8.11 -2.38 -0.02 0.67 16 32 H 0.06 2.74 7.66 -2.38 -0.02 2.72 16 33 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 34 H -0.01 -0.38 6.35 -2.39 -0.02 -0.40 16 35 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.04 1.15 6.66 -2.39 -0.02 1.13 16 37 H 0.07 2.04 7.04 -2.39 -0.02 2.02 16 Total: -1.00 -64.78 280.57 2.92 -61.85 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.01 Total: 5.19 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 3.21 Total: -31.23 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -3.32 Total: -82.87 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -64.78 2.92 -61.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306687038.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.861 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds