Wall clock time and date at job start Sun Mar 29 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 108.75642 * 2 1 4 4 C 1.50540 * 108.78834 * 118.34829 * 2 1 3 5 5 C 1.54516 * 108.86172 * 212.52843 * 4 2 1 6 6 C 1.45881 * 111.67806 * 282.76159 * 5 4 2 7 7 C 1.53983 * 112.65979 * 61.49963 * 6 5 4 8 8 N 1.44303 * 108.31527 * 278.60118 * 7 6 5 9 9 C 1.46904 * 111.00032 * 221.35278 * 8 7 6 10 10 C 1.52998 * 109.46861 * 66.04744 * 9 8 7 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47942 * 113.64865 * 95.40036 * 8 7 6 20 20 H 1.08996 * 109.47326 * 301.64960 * 1 2 3 21 21 H 1.08999 * 109.47374 * 61.65170 * 1 2 3 22 22 H 1.09006 * 109.46920 * 181.64778 * 1 2 3 23 23 H 1.09005 * 109.56742 * 92.72041 * 4 2 1 24 24 H 1.08993 * 109.57052 * 332.34783 * 4 2 1 25 25 H 1.09001 * 109.03816 * 162.19478 * 5 4 2 26 26 H 1.09008 * 109.04093 * 43.32632 * 5 4 2 27 27 H 1.08998 * 108.83662 * 300.68093 * 6 5 4 28 28 H 1.08994 * 108.76012 * 182.26198 * 6 5 4 29 29 H 1.08997 * 109.69219 * 158.90266 * 7 6 5 30 30 H 1.08994 * 109.72779 * 38.32718 * 7 6 5 31 31 H 1.09004 * 109.47048 * 306.04928 * 9 8 7 32 32 H 1.08997 * 109.46845 * 186.05091 * 9 8 7 33 33 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 34 34 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 35 35 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 36 36 H 1.08998 * 108.71712 * 79.13354 * 19 8 7 37 37 H 1.08998 * 108.71261 * 197.14695 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8804 1.0321 0.0000 4 6 2.0148 -0.6767 1.2543 5 6 3.3428 -0.0208 1.6944 6 6 4.4650 -0.4787 0.8825 7 6 4.3042 -0.1220 -0.6068 8 7 3.4424 -1.1049 -1.2180 9 6 3.9407 -1.4893 -2.5454 10 6 5.2770 -2.2193 -2.3967 11 6 5.7878 -2.6142 -3.7583 12 1 5.2168 -2.3688 -4.6415 13 6 6.9844 -3.2890 -3.8767 14 7 7.4305 -3.6332 -5.0651 15 14 7.9720 -3.7142 -2.3492 16 1 7.5551 -5.0476 -1.8455 17 1 7.7280 -2.6908 -1.3012 18 1 9.4179 -3.7424 -2.6864 19 6 2.0235 -0.6911 -1.2837 20 1 -0.3634 0.5392 0.8748 21 1 -0.3634 0.4880 -0.9044 22 1 -0.3633 -1.0273 0.0296 23 1 2.1785 -1.7363 1.0575 24 1 1.2712 -0.5605 2.0426 25 1 3.5338 -0.2703 2.7381 26 1 3.2535 1.0615 1.5994 27 1 4.5500 -1.5611 0.9782 28 1 5.3795 -0.0195 1.2578 29 1 5.2789 -0.1341 -1.0946 30 1 3.8580 0.8678 -0.7020 31 1 4.0805 -0.5958 -3.1538 32 1 3.2185 -2.1480 -3.0277 33 1 5.1372 -3.1128 -1.7882 34 1 5.9992 -1.5606 -1.9143 35 1 8.2721 -4.1082 -5.1483 36 1 1.8979 -0.0045 -2.1209 37 1 1.4098 -1.5737 -1.4637 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306687039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:58 Heat of formation + Delta-G solvation = -19.362390 kcal Electronic energy + Delta-G solvation = -14661.152673 eV Core-core repulsion = 12437.426042 eV Total energy + Delta-G solvation = -2223.726631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.12042 -35.23169 -33.41636 -32.72123 -30.02091 -27.61929 -25.60945 -24.79047 -22.80022 -20.34947 -19.98008 -19.11150 -16.87589 -15.63499 -15.29880 -14.87995 -14.24240 -13.83993 -13.37239 -13.31559 -12.81926 -12.75076 -12.55518 -12.30537 -11.92342 -11.40272 -11.27743 -10.94970 -10.85473 -10.43428 -10.36593 -10.28191 -10.14641 -10.01489 -9.68578 -9.60871 -9.15239 -8.49833 -7.62516 -6.01746 -3.99520 3.34925 3.41608 3.47084 4.36631 4.48939 4.75466 4.92893 5.06167 5.29145 5.31159 5.33150 5.49205 5.58979 5.71307 5.76337 5.83877 5.90578 5.96839 6.02510 6.13108 6.19075 6.21244 6.32890 6.39479 6.41271 6.53775 6.57055 6.70123 6.83326 7.22099 7.44335 7.71461 7.81505 7.93195 8.56427 9.02691 9.61070 11.11706 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045193 B = 0.007626 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.415456 B = 3671.007090 C = 4102.496480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.111 4.111 6 C -0.117 4.117 7 C 0.061 3.939 8 N -0.552 5.552 9 C 0.075 3.925 10 C -0.007 4.007 11 C -0.521 4.521 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.264 1.264 18 H -0.289 1.289 19 C 0.068 3.932 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.263 0.737 36 H 0.025 0.975 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 7.656 12.691 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.080 0.920 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.068 4.068 8 N -0.276 5.276 9 C -0.052 4.052 10 C -0.044 4.044 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.189 1.189 18 H -0.215 1.215 19 C -0.059 4.059 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.304 7.185 12.877 17.989 hybrid contribution 0.579 0.419 0.094 0.721 sum -9.725 7.604 12.971 17.906 Atomic orbital electron populations 1.21887 0.95279 1.01823 1.01289 1.20968 0.95235 0.99557 0.95244 0.92009 1.21379 0.96096 1.01215 0.95728 1.20547 0.95638 0.99616 0.99022 1.20500 0.97303 1.02581 0.95100 1.21805 0.97579 0.92671 0.94715 1.60808 1.00858 1.41890 1.24069 1.22101 0.98528 0.98134 0.86397 1.19596 0.91770 0.95573 0.97497 1.21108 1.05975 1.36542 0.92303 0.91189 1.24997 0.97338 0.95223 0.95826 1.69920 1.21418 1.40481 1.22602 0.86753 0.79021 0.79409 0.83971 1.20266 1.18888 1.21545 1.22393 0.89749 0.98461 0.95338 0.92804 0.92992 0.92516 0.90725 0.92692 0.92812 0.93088 0.91052 0.92900 0.90555 0.94968 0.95781 0.91784 0.96209 0.96541 0.92773 0.95654 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.79 37.15 0.33 -1.12 16 2 C -0.09 -1.10 2.19 -91.37 -0.20 -1.30 16 3 H 0.06 0.76 6.66 -51.93 -0.35 0.41 16 4 C -0.11 -1.28 5.13 -27.16 -0.14 -1.42 16 5 C -0.11 -1.34 5.34 -29.30 -0.16 -1.50 16 6 C -0.12 -1.68 5.37 -29.59 -0.16 -1.84 16 7 C 0.06 1.00 5.10 -4.70 -0.02 0.98 16 8 N -0.55 -9.72 4.00 -234.63 -0.94 -10.66 16 9 C 0.07 1.56 4.75 -3.82 -0.02 1.54 16 10 C -0.01 -0.16 4.00 -27.88 -0.11 -0.28 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 12 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.91 -28.29 13.96 55.43 0.77 -27.52 16 15 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 C 0.07 1.00 4.74 -2.77 -0.01 0.99 16 20 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.02 7.79 -51.93 -0.40 0.62 16 24 H 0.05 0.57 7.69 -51.93 -0.40 0.17 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 7.59 -51.92 -0.39 0.19 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 1.40 5.87 -51.93 -0.30 1.09 16 30 H 0.03 0.49 6.79 -51.93 -0.35 0.14 16 31 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 34 H 0.02 0.40 5.45 -51.93 -0.28 0.12 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.03 0.38 8.02 -51.93 -0.42 -0.04 16 37 H 0.07 0.99 7.97 -51.93 -0.41 0.57 16 LS Contribution 279.30 15.07 4.21 4.21 Total: -1.00 -30.13 279.30 -8.21 -38.34 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.66 Total: -4.40 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -0.93 Total: -17.50 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.17 Total: -38.17 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.13 -8.21 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306687039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.978 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds