Wall clock time and date at job start Sun Mar 29 2020 21:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 108.75642 * 2 1 4 4 C 1.50540 * 108.78834 * 118.34829 * 2 1 3 5 5 C 1.54516 * 108.86172 * 212.52843 * 4 2 1 6 6 C 1.45881 * 111.67806 * 282.76159 * 5 4 2 7 7 C 1.53983 * 112.65979 * 61.49963 * 6 5 4 8 8 N 1.44303 * 108.31527 * 278.60118 * 7 6 5 9 9 C 1.46904 * 111.00032 * 221.35278 * 8 7 6 10 10 C 1.52998 * 109.46861 * 66.04744 * 9 8 7 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47942 * 113.64865 * 95.40036 * 8 7 6 20 20 H 1.08996 * 109.47326 * 301.64960 * 1 2 3 21 21 H 1.08999 * 109.47374 * 61.65170 * 1 2 3 22 22 H 1.09006 * 109.46920 * 181.64778 * 1 2 3 23 23 H 1.09005 * 109.56742 * 92.72041 * 4 2 1 24 24 H 1.08993 * 109.57052 * 332.34783 * 4 2 1 25 25 H 1.09001 * 109.03816 * 162.19478 * 5 4 2 26 26 H 1.09008 * 109.04093 * 43.32632 * 5 4 2 27 27 H 1.08998 * 108.83662 * 300.68093 * 6 5 4 28 28 H 1.08994 * 108.76012 * 182.26198 * 6 5 4 29 29 H 1.08997 * 109.69219 * 158.90266 * 7 6 5 30 30 H 1.08994 * 109.72779 * 38.32718 * 7 6 5 31 31 H 1.09004 * 109.47048 * 306.04928 * 9 8 7 32 32 H 1.08997 * 109.46845 * 186.05091 * 9 8 7 33 33 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 34 34 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 35 35 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 36 36 H 1.08998 * 108.71712 * 79.13354 * 19 8 7 37 37 H 1.08998 * 108.71261 * 197.14695 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8804 1.0321 0.0000 4 6 2.0148 -0.6767 1.2543 5 6 3.3428 -0.0208 1.6944 6 6 4.4650 -0.4787 0.8825 7 6 4.3042 -0.1220 -0.6068 8 7 3.4424 -1.1049 -1.2180 9 6 3.9407 -1.4893 -2.5454 10 6 5.2770 -2.2193 -2.3967 11 6 5.7878 -2.6142 -3.7583 12 1 5.2168 -2.3688 -4.6415 13 6 6.9844 -3.2890 -3.8767 14 7 7.4305 -3.6332 -5.0651 15 14 7.9720 -3.7142 -2.3492 16 1 7.5551 -5.0476 -1.8455 17 1 7.7280 -2.6908 -1.3012 18 1 9.4179 -3.7424 -2.6864 19 6 2.0235 -0.6911 -1.2837 20 1 -0.3634 0.5392 0.8748 21 1 -0.3634 0.4880 -0.9044 22 1 -0.3633 -1.0273 0.0296 23 1 2.1785 -1.7363 1.0575 24 1 1.2712 -0.5605 2.0426 25 1 3.5338 -0.2703 2.7381 26 1 3.2535 1.0615 1.5994 27 1 4.5500 -1.5611 0.9782 28 1 5.3795 -0.0195 1.2578 29 1 5.2789 -0.1341 -1.0946 30 1 3.8580 0.8678 -0.7020 31 1 4.0805 -0.5958 -3.1538 32 1 3.2185 -2.1480 -3.0277 33 1 5.1372 -3.1128 -1.7882 34 1 5.9992 -1.5606 -1.9143 35 1 8.2721 -4.1082 -5.1483 36 1 1.8979 -0.0045 -2.1209 37 1 1.4098 -1.5737 -1.4637 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306687039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:58 Heat of formation + Delta-G solvation = -37.702815 kcal Electronic energy + Delta-G solvation = -14661.947973 eV Core-core repulsion = 12437.426042 eV Total energy + Delta-G solvation = -2224.521931 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.32451 -36.65478 -34.81440 -34.45056 -31.93107 -28.67886 -27.21740 -25.98482 -24.34419 -21.87209 -21.29076 -20.26378 -19.04280 -16.96851 -16.59544 -16.35257 -15.83594 -15.33143 -14.83408 -14.68092 -14.43390 -14.06108 -13.70612 -13.43683 -13.30514 -12.94637 -12.78310 -12.35315 -12.30986 -11.94087 -11.69521 -11.59402 -11.47995 -11.38807 -11.23201 -11.18974 -11.07002 -10.76238 -9.04162 -8.31233 -6.35386 1.35753 1.36665 1.49920 2.35526 3.01453 3.04314 3.75614 3.98833 4.02333 4.16108 4.23676 4.40706 4.43875 4.49992 4.62229 4.73010 4.78116 4.86354 4.92567 4.93918 4.96084 5.02827 5.19789 5.23885 5.29389 5.34320 5.42203 5.46988 5.50547 5.56147 5.61613 5.65589 6.19787 6.30593 6.48461 6.72441 7.29418 8.85571 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045193 B = 0.007626 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.415456 B = 3671.007090 C = 4102.496480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.065 0.935 4 C -0.105 4.105 5 C -0.110 4.110 6 C -0.111 4.111 7 C 0.058 3.942 8 N -0.555 5.555 9 C 0.087 3.913 10 C 0.003 3.997 11 C -0.534 4.534 12 H 0.031 0.969 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.248 1.248 18 H -0.282 1.282 19 C 0.065 3.935 20 H 0.071 0.929 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.014 0.986 32 H 0.057 0.943 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.022 0.978 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 8.413 15.470 20.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.149 4.149 7 C -0.070 4.070 8 N -0.280 5.280 9 C -0.041 4.041 10 C -0.035 4.035 11 C -0.573 4.573 12 H 0.049 0.951 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.172 1.172 18 H -0.207 1.207 19 C -0.062 4.062 20 H 0.090 0.910 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.041 0.959 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.944 7.957 15.666 20.701 hybrid contribution 0.723 0.206 -0.863 1.145 sum -10.222 8.163 14.803 19.755 Atomic orbital electron populations 1.21855 0.93456 1.02238 1.02296 1.20945 0.96688 0.99128 0.93746 0.91698 1.21375 0.96732 0.99901 0.96228 1.20536 0.94606 1.00223 0.99366 1.20462 0.99074 1.01526 0.93826 1.21866 0.96188 0.93124 0.95848 1.60780 1.02501 1.43067 1.21647 1.21784 0.96738 0.97276 0.88280 1.19444 0.93609 0.95779 0.94652 1.21430 1.06001 1.36622 0.93239 0.95055 1.25967 0.98599 0.94991 0.99379 1.70064 1.22253 1.41569 1.25217 0.85635 0.77327 0.79770 0.79784 1.19227 1.17164 1.20744 1.22517 0.87795 0.98687 0.97171 0.91020 0.92766 0.92466 0.92629 0.90474 0.91193 0.91922 0.92867 0.91809 0.92882 0.93623 0.96738 0.92452 0.96373 0.96184 0.92402 0.95936 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.79 71.98 0.63 -1.76 16 2 C -0.09 -1.86 2.19 -11.28 -0.02 -1.89 16 3 H 0.06 1.38 6.66 -2.39 -0.02 1.37 16 4 C -0.10 -2.20 5.13 30.31 0.16 -2.04 16 5 C -0.11 -2.30 5.34 28.93 0.15 -2.15 16 6 C -0.11 -2.95 5.37 28.74 0.15 -2.79 16 7 C 0.06 1.83 5.10 87.12 0.44 2.28 16 8 N -0.56 -19.16 4.00 -896.25 -3.59 -22.75 16 9 C 0.09 3.66 4.75 86.30 0.41 4.07 16 10 C 0.00 0.14 4.00 29.85 0.12 0.26 16 11 C -0.53 -31.89 9.66 25.60 0.25 -31.64 16 12 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 13 C 0.01 0.45 5.47 84.65 0.46 0.92 16 14 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 15 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 C 0.07 1.84 4.74 86.41 0.41 2.25 16 20 H 0.07 0.99 8.07 -2.39 -0.02 0.97 16 21 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 23 H 0.05 1.40 7.79 -2.38 -0.02 1.38 16 24 H 0.08 1.30 7.69 -2.39 -0.02 1.28 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.20 7.59 -2.38 -0.02 1.18 16 27 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.05 1.91 5.87 -2.39 -0.01 1.89 16 30 H 0.05 1.30 6.79 -2.39 -0.02 1.29 16 31 H 0.01 0.63 8.12 -2.39 -0.02 0.61 16 32 H 0.06 2.46 8.04 -2.39 -0.02 2.44 16 33 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 34 H 0.02 0.97 5.45 -2.39 -0.01 0.96 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.02 0.65 8.02 -2.39 -0.02 0.63 16 37 H 0.07 1.87 7.97 -2.39 -0.02 1.85 16 Total: -1.00 -65.41 279.30 2.71 -62.70 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.95 Total: 5.48 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 3.17 Total: -32.50 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.29 Total: -83.20 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -65.41 2.71 -62.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306687039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.002 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds