Wall clock time and date at job start Sun Mar 29 2020 21:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21535 * 120.00134 * 2 1 4 4 C 1.40532 * 119.99620 * 179.97438 * 2 1 3 5 5 S 1.75811 * 125.51200 * 359.97438 * 4 2 1 6 6 C 1.70558 * 91.70469 * 179.97438 * 5 4 2 7 7 C 1.33659 * 111.27836 * 0.02562 * 6 5 4 8 8 C 1.37982 * 115.14434 * 0.02562 * 7 6 5 9 9 O 1.35483 * 123.55181 * 179.97438 * 8 7 6 10 10 C 1.34763 * 117.00240 * 0.02562 * 9 8 7 11 11 H 1.07998 * 119.99759 * 0.02562 * 10 9 8 12 12 C 1.38731 * 119.99936 * 179.97438 * 10 9 8 13 13 N 1.31492 * 120.00083 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99670 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47075 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46826 * 120.00524 * 14 12 10 17 17 H 1.48505 * 109.46756 * 240.00319 * 14 12 10 18 18 H 1.09004 * 109.47106 * 240.00332 * 1 2 3 19 19 H 1.09000 * 109.46454 * 0.02562 * 1 2 3 20 20 H 1.08993 * 109.46824 * 119.99709 * 1 2 3 21 21 H 1.07995 * 124.36024 * 179.73736 * 6 5 4 22 22 H 1.07995 * 122.42872 * 179.97438 * 7 6 5 23 23 H 0.97002 * 119.99686 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1148 1.0525 0.0000 4 6 2.2096 -1.2171 0.0005 5 16 1.4808 -2.8170 0.0019 6 6 3.0112 -3.5699 0.0010 7 6 3.9962 -2.6665 0.0004 8 6 3.5840 -1.3497 0.0011 9 8 4.4379 -0.2978 0.0011 10 6 5.7558 -0.5795 -0.0002 11 1 6.0883 -1.6070 -0.0016 12 6 6.6852 0.4504 -0.0008 13 7 6.2803 1.7015 0.0003 14 14 8.5120 0.0599 -0.0033 15 1 8.7034 -1.4127 -0.0049 16 1 9.1409 0.6417 -1.2162 17 1 9.1439 0.6403 1.2088 18 1 -0.3633 -0.5138 0.8900 19 1 -0.3632 1.0277 -0.0005 20 1 -0.3633 -0.5138 -0.8900 21 1 3.1645 -4.6389 0.0055 22 1 5.0391 -2.9469 0.0002 23 1 6.9302 2.4216 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306692881.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:41 Heat of formation + Delta-G solvation = -58.688888 kcal Electronic energy + Delta-G solvation = -11711.541646 eV Core-core repulsion = 9423.644616 eV Total energy + Delta-G solvation = -2287.897030 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.96850 -39.44708 -36.83028 -34.32976 -32.08850 -29.66588 -27.19960 -25.34437 -22.16668 -21.14772 -19.22140 -18.34050 -17.54042 -16.47736 -16.27360 -15.87719 -15.49646 -15.24914 -14.96687 -14.20872 -13.79008 -13.26812 -13.20877 -12.94774 -12.89259 -12.62241 -12.20713 -11.98542 -11.51300 -10.91009 -10.48707 -9.62928 -8.84391 -8.57130 -6.24588 -0.39038 0.87717 1.08042 1.32763 1.33732 1.50286 1.52726 2.12827 2.21465 2.94908 3.52466 3.64033 4.07938 4.40274 4.48136 4.68399 4.69128 4.83147 5.01897 5.09008 5.32769 5.59651 5.86382 6.80836 7.05442 7.61891 8.63937 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.041004 B = 0.010511 C = 0.008404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.694010 B = 2663.247420 C = 3330.796364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.393 3.607 3 O -0.540 6.540 4 C -0.459 4.459 5 S 0.258 5.742 6 C -0.164 4.164 7 C -0.241 4.241 8 C 0.162 3.838 9 O -0.175 6.175 10 C -0.425 4.425 11 H 0.112 0.888 12 C -0.022 4.022 13 N -0.904 5.904 14 Si 1.030 2.970 15 H -0.242 1.242 16 H -0.267 1.267 17 H -0.267 1.267 18 H 0.110 0.890 19 H 0.078 0.922 20 H 0.110 0.890 21 H 0.212 0.788 22 H 0.145 0.855 23 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 -12.745 0.003 14.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.281 3.719 3 O -0.426 6.426 4 C -0.576 4.576 5 S 0.520 5.480 6 C -0.302 4.302 7 C -0.276 4.276 8 C 0.096 3.904 9 O -0.076 6.076 10 C -0.501 4.501 11 H 0.130 0.870 12 C -0.222 4.222 13 N -0.539 5.539 14 Si 0.848 3.152 15 H -0.165 1.165 16 H -0.192 1.192 17 H -0.192 1.192 18 H 0.128 0.872 19 H 0.097 0.903 20 H 0.128 0.872 21 H 0.229 0.771 22 H 0.163 0.837 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.057 -12.269 0.005 14.678 hybrid contribution 2.495 0.867 -0.003 2.641 sum -5.562 -11.402 0.002 12.687 Atomic orbital electron populations 1.22159 0.90690 1.05099 1.05892 1.20500 0.93235 0.86353 0.71832 1.90687 1.73544 1.35575 1.42759 1.23115 0.94691 1.01932 1.37855 1.81682 1.04104 0.90134 1.72129 1.25509 0.97796 1.05623 1.01247 1.20122 1.02721 0.91151 1.13562 1.19768 0.90554 0.88695 0.91395 1.84049 1.17482 1.29846 1.76262 1.22213 0.78235 0.95894 1.53801 0.87026 1.26917 1.06423 0.93836 0.95015 1.70279 1.37538 1.00387 1.45724 0.84395 0.72185 0.79984 0.78674 1.16474 1.19207 1.19194 0.87160 0.90266 0.87167 0.77126 0.83707 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.43 9.59 71.24 0.68 -4.75 14 2 C 0.39 18.14 7.02 26.25 0.18 18.32 14 3 O -0.54 -32.26 16.58 12.94 0.21 -32.05 14 4 C -0.46 -20.31 6.23 22.79 0.14 -20.17 14 5 S 0.26 7.19 22.39 -56.49 -1.26 5.92 14 6 C -0.16 -4.70 10.89 66.78 0.73 -3.97 14 7 C -0.24 -9.67 9.25 21.17 0.20 -9.47 14 8 C 0.16 8.30 6.68 22.17 0.15 8.44 14 9 O -0.17 -11.13 8.63 -2.38 -0.02 -11.15 14 10 C -0.43 -25.11 9.57 67.94 0.65 -24.46 14 11 H 0.11 5.79 5.57 -2.91 -0.02 5.78 14 12 C -0.02 -1.26 5.49 84.86 0.47 -0.79 14 13 N -0.90 -58.00 13.67 21.62 0.30 -57.70 14 14 Si 1.03 42.58 29.55 68.60 2.03 44.61 14 15 H -0.24 -8.92 7.11 99.48 0.71 -8.21 14 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 14 17 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 18 H 0.11 2.64 8.14 -2.39 -0.02 2.62 14 19 H 0.08 2.33 8.12 -2.39 -0.02 2.31 14 20 H 0.11 2.64 8.14 -2.39 -0.02 2.62 14 21 H 0.21 3.79 8.06 -2.91 -0.02 3.77 14 22 H 0.15 5.63 6.18 -2.91 -0.02 5.61 14 23 H 0.28 16.07 8.31 -92.71 -0.77 15.30 14 Total: -1.00 -82.92 229.38 5.68 -77.23 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.23 Total: 9.98 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.20 Total: -36.85 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: 0.19 Total: -43.20 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 7.19 SS G_CDS: -1.26 Total: 5.92 kcal Total: -82.92 5.68 -77.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306692881.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.543 kcal (2) G-P(sol) polarization free energy of solvation -82.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds