Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48513 * 109.46900 * 239.99833 * 3 2 1 5 5 H 1.48495 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 119.99777 * 3 2 1 7 7 C 1.38953 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99732 * 179.72439 * 9 7 2 11 11 O 1.21287 * 120.00403 * 354.97553 * 10 9 7 12 12 C 1.50704 * 119.99728 * 174.97611 * 10 9 7 13 13 C 1.50704 * 112.84634 * 303.83450 * 12 10 9 14 14 N 1.34777 * 120.00042 * 294.16486 * 13 12 10 15 15 O 1.21277 * 119.99957 * 114.17434 * 13 12 10 16 16 C 1.53781 * 113.61192 * 172.64366 * 12 10 9 17 17 C 1.53960 * 87.01611 * 220.04592 * 16 12 10 18 18 C 1.53775 * 87.11255 * 25.35911 * 17 16 12 19 19 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00408 * 0.02562 * 9 7 2 21 21 H 0.96994 * 120.00103 * 354.91039 * 14 13 12 22 22 H 0.97004 * 119.99958 * 174.90782 * 14 13 12 23 23 H 1.08998 * 113.61409 * 334.55945 * 16 12 10 24 24 H 1.08993 * 113.61710 * 105.46705 * 16 12 10 25 25 H 1.09001 * 113.53257 * 270.80654 * 17 16 12 26 26 H 1.08999 * 113.74215 * 139.94121 * 17 16 12 27 27 H 1.08998 * 113.62037 * 220.09075 * 18 17 16 28 28 H 1.09002 * 113.69112 * 89.19876 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 -0.0035 11 8 3.2062 -3.5598 -0.1010 12 6 1.2486 -4.8607 0.1120 13 6 0.3824 -4.9306 1.3432 14 7 0.9490 -4.9412 2.5660 15 8 -0.8245 -4.9776 1.2337 16 6 2.1357 -6.1007 -0.0884 17 6 0.9662 -6.7095 -0.8834 18 6 0.5187 -5.2682 -1.1787 19 1 -0.4850 0.8400 -0.0004 20 1 0.3534 -2.3907 0.0016 21 1 1.9143 -4.9784 2.6530 22 1 0.3914 -4.9116 3.3592 23 1 3.0223 -5.9102 -0.6932 24 1 2.3592 -6.6318 0.8367 25 1 0.2629 -7.2670 -0.2648 26 1 1.2783 -7.2602 -1.7708 27 1 -0.5613 -5.1281 -1.1324 28 1 0.9615 -4.8485 -2.0819 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306696321.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -64.492117 kcal Electronic energy + Delta-G solvation = -14401.124072 eV Core-core repulsion = 11838.348370 eV Total energy + Delta-G solvation = -2562.775703 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46733 -37.80988 -36.39133 -33.96781 -33.28694 -31.27854 -27.26831 -25.35070 -24.51299 -21.77856 -20.20914 -18.55927 -18.03449 -16.90971 -16.66499 -15.53523 -14.94402 -14.62459 -14.18021 -13.82872 -13.41154 -13.15659 -12.66647 -12.11418 -11.76912 -11.50278 -11.10079 -10.74787 -10.69360 -10.47399 -10.27826 -10.05088 -9.63213 -9.53168 -9.35322 -8.40859 -8.04082 -6.46062 -3.88572 2.91497 3.15903 3.23193 3.26994 3.65369 3.89064 4.12257 4.73413 4.89957 4.94880 5.05543 5.28856 5.31472 5.60737 5.90644 6.04566 6.17901 6.26439 6.34968 6.42042 6.66136 7.05651 7.49087 7.61026 7.97485 8.51966 8.56637 9.09209 9.46725 9.95179 10.70330 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.009509 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.421205 B = 2943.901661 C = 3119.205949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.308 4.308 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.454 3.546 11 O -0.589 6.589 12 C -0.128 4.128 13 C 0.553 3.447 14 N -0.849 5.849 15 O -0.541 6.541 16 C -0.101 4.101 17 C -0.144 4.144 18 C -0.110 4.110 19 H 0.274 0.726 20 H 0.396 0.604 21 H 0.404 0.596 22 H 0.399 0.601 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -9.010 1.877 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.437 4.437 8 H 0.122 0.878 9 N -0.181 5.181 10 C 0.239 3.761 11 O -0.475 6.475 12 C -0.135 4.135 13 C 0.337 3.663 14 N -0.411 5.411 15 O -0.418 6.418 16 C -0.139 4.139 17 C -0.181 4.181 18 C -0.148 4.148 19 H 0.084 0.916 20 H 0.229 0.771 21 H 0.232 0.768 22 H 0.230 0.770 23 H 0.121 0.879 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.987 -8.835 1.568 9.027 hybrid contribution 0.042 0.993 0.480 1.104 sum 1.029 -7.842 2.048 8.170 Atomic orbital electron populations 1.69636 1.06023 1.28554 1.48955 1.25344 0.95630 0.99922 0.96838 0.85888 0.78770 0.80249 0.79126 1.19749 1.20867 1.19816 1.19704 0.93375 0.82172 1.48476 0.87761 1.41920 1.09512 1.04506 1.62212 1.19054 0.87616 0.83671 0.85798 1.90513 1.13663 1.86523 1.56837 1.22163 0.98361 0.97612 0.95364 1.19733 0.87879 0.74132 0.84522 1.43696 1.11904 1.77822 1.07716 1.90697 1.14623 1.49623 1.86828 1.22792 0.97538 0.92736 1.00798 1.22921 0.98088 0.96615 1.00470 1.22774 1.01424 0.95380 0.95206 0.91557 0.77057 0.76773 0.77004 0.87939 0.91505 0.90314 0.91006 0.89668 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.05 55.50 0.72 -24.05 15 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 15 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 7 C -0.31 -8.60 9.68 -14.93 -0.14 -8.74 15 8 H 0.10 2.99 7.17 -52.48 -0.38 2.61 15 9 N -0.55 -14.27 5.19 -10.96 -0.06 -14.32 15 10 C 0.45 10.75 6.79 -10.98 -0.07 10.68 15 11 O -0.59 -15.46 15.56 5.55 0.09 -15.37 15 12 C -0.13 -2.42 1.04 -156.00 -0.16 -2.58 15 13 C 0.55 10.29 6.59 -10.98 -0.07 10.22 15 14 N -0.85 -12.56 8.87 31.22 0.28 -12.28 15 15 O -0.54 -11.49 16.78 5.56 0.09 -11.40 15 16 C -0.10 -1.56 6.95 -25.82 -0.18 -1.74 15 17 C -0.14 -2.01 7.81 -25.83 -0.20 -2.21 15 18 C -0.11 -1.88 7.09 -25.92 -0.18 -2.06 15 19 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 20 H 0.40 10.48 7.86 -40.82 -0.32 10.16 15 21 H 0.40 5.36 8.83 -40.82 -0.36 5.00 15 22 H 0.40 5.06 8.93 -40.82 -0.36 4.70 15 23 H 0.10 1.69 7.54 -51.93 -0.39 1.30 15 24 H 0.07 0.90 8.09 -51.93 -0.42 0.48 15 25 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 27 H 0.08 1.51 7.34 -51.93 -0.38 1.13 15 28 H 0.09 1.56 8.09 -51.93 -0.42 1.14 15 LS Contribution 250.22 15.07 3.77 3.77 Total: -1.00 -31.98 250.22 -4.26 -36.24 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -3.02 Total: 17.37 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.11 Total: 4.16 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.94 Total: -50.65 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: 0.18 Total: -26.77 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.98 -4.26 -36.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306696321.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.257 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds