Wall clock time and date at job start Sun Mar 29 2020 21:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48513 * 109.46900 * 239.99833 * 3 2 1 5 5 H 1.48495 * 109.47245 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47379 * 119.99777 * 3 2 1 7 7 C 1.38953 * 119.99762 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99486 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99732 * 179.72439 * 9 7 2 11 11 O 1.21287 * 120.00403 * 354.97553 * 10 9 7 12 12 C 1.50704 * 119.99728 * 174.97611 * 10 9 7 13 13 C 1.50704 * 112.84634 * 303.83450 * 12 10 9 14 14 N 1.34777 * 120.00042 * 294.16486 * 13 12 10 15 15 O 1.21277 * 119.99957 * 114.17434 * 13 12 10 16 16 C 1.53781 * 113.61192 * 172.64366 * 12 10 9 17 17 C 1.53960 * 87.01611 * 220.04592 * 16 12 10 18 18 C 1.53775 * 87.11255 * 25.35911 * 17 16 12 19 19 H 0.96998 * 119.99886 * 0.02562 * 1 2 3 20 20 H 0.96995 * 120.00408 * 0.02562 * 9 7 2 21 21 H 0.96994 * 120.00103 * 354.91039 * 14 13 12 22 22 H 0.97004 * 119.99958 * 174.90782 * 14 13 12 23 23 H 1.08998 * 113.61409 * 334.55945 * 16 12 10 24 24 H 1.08993 * 113.61710 * 105.46705 * 16 12 10 25 25 H 1.09001 * 113.53257 * 270.80654 * 17 16 12 26 26 H 1.08999 * 113.74215 * 139.94121 * 17 16 12 27 27 H 1.08998 * 113.62037 * 220.09075 * 18 17 16 28 28 H 1.09002 * 113.69112 * 89.19876 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 -0.0035 11 8 3.2062 -3.5598 -0.1010 12 6 1.2486 -4.8607 0.1120 13 6 0.3824 -4.9306 1.3432 14 7 0.9490 -4.9412 2.5660 15 8 -0.8245 -4.9776 1.2337 16 6 2.1357 -6.1007 -0.0884 17 6 0.9662 -6.7095 -0.8834 18 6 0.5187 -5.2682 -1.1787 19 1 -0.4850 0.8400 -0.0004 20 1 0.3534 -2.3907 0.0016 21 1 1.9143 -4.9784 2.6530 22 1 0.3914 -4.9116 3.3592 23 1 3.0223 -5.9102 -0.6932 24 1 2.3592 -6.6318 0.8367 25 1 0.2629 -7.2670 -0.2648 26 1 1.2783 -7.2602 -1.7708 27 1 -0.5613 -5.1281 -1.1324 28 1 0.9615 -4.8485 -2.0819 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306696321.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:24 Heat of formation + Delta-G solvation = -90.191857 kcal Electronic energy + Delta-G solvation = -14402.238497 eV Core-core repulsion = 11838.348370 eV Total energy + Delta-G solvation = -2563.890127 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.98768 -39.58711 -37.91807 -35.99368 -34.67632 -33.33011 -28.87000 -26.76358 -26.32995 -23.21810 -21.88096 -20.18004 -19.87223 -18.54955 -18.11687 -16.99127 -16.90172 -15.99677 -15.97798 -15.58834 -15.05228 -14.86823 -14.29946 -13.61207 -13.43720 -13.06227 -12.87595 -12.48580 -12.21903 -12.14070 -11.93579 -11.56864 -11.37229 -11.05331 -10.70806 -10.31194 -10.10298 -8.50985 -6.02827 1.32994 1.40395 1.45313 1.52809 1.88485 2.26325 2.48906 3.03993 3.13304 3.54187 3.62980 3.80530 3.93171 4.17654 4.50518 4.69929 4.85837 4.97518 5.04753 5.10677 5.35352 5.42184 5.81057 5.91686 6.28591 6.47547 7.02462 7.21102 7.44639 7.94974 8.65696 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.041880 B = 0.009509 C = 0.008974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.421205 B = 2943.901661 C = 3119.205949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.340 4.340 8 H 0.089 0.911 9 N -0.562 5.562 10 C 0.460 3.540 11 O -0.616 6.616 12 C -0.137 4.137 13 C 0.552 3.448 14 N -0.830 5.830 15 O -0.571 6.571 16 C -0.094 4.094 17 C -0.121 4.121 18 C -0.117 4.117 19 H 0.279 0.721 20 H 0.391 0.609 21 H 0.413 0.587 22 H 0.412 0.588 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.541 -9.706 2.192 10.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.214 4.214 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.107 0.893 9 N -0.196 5.196 10 C 0.246 3.754 11 O -0.503 6.503 12 C -0.143 4.143 13 C 0.335 3.665 14 N -0.394 5.394 15 O -0.450 6.450 16 C -0.132 4.132 17 C -0.158 4.158 18 C -0.155 4.155 19 H 0.089 0.911 20 H 0.224 0.776 21 H 0.243 0.757 22 H 0.245 0.755 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.107 0.893 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.453 -9.553 1.912 9.850 hybrid contribution -0.074 1.157 0.396 1.225 sum 1.379 -8.396 2.308 8.816 Atomic orbital electron populations 1.69724 1.07295 1.29652 1.49336 1.26219 0.96476 1.02955 0.95744 0.84891 0.77651 0.75937 0.79268 1.19354 1.19737 1.19135 1.19781 0.92996 0.83671 1.50507 0.89286 1.42017 1.09149 1.04989 1.63416 1.19846 0.87498 0.84639 0.83389 1.90486 1.15099 1.87339 1.57383 1.22289 0.99464 0.95850 0.96711 1.19679 0.87367 0.74152 0.85269 1.43553 1.12652 1.76010 1.07136 1.90686 1.15701 1.51323 1.87289 1.22821 0.97222 0.90964 1.02179 1.22841 0.96915 0.94710 1.01350 1.22840 1.00622 0.97995 0.94071 0.91144 0.77622 0.75656 0.75541 0.88831 0.88977 0.89305 0.88179 0.90624 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.45 13.05 21.66 0.28 -51.17 15 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 15 3 Si 1.00 42.69 29.55 68.60 2.03 44.71 15 4 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 6 H -0.27 -11.03 7.11 99.48 0.71 -10.33 15 7 C -0.34 -19.36 9.68 84.04 0.81 -18.55 15 8 H 0.09 5.23 7.17 -2.91 -0.02 5.21 15 9 N -0.56 -29.84 5.19 -306.98 -1.59 -31.44 15 10 C 0.46 21.90 6.79 87.66 0.59 22.49 15 11 O -0.62 -32.47 15.56 -3.05 -0.05 -32.52 15 12 C -0.14 -5.03 1.04 -53.15 -0.06 -5.08 15 13 C 0.55 19.92 6.59 87.66 0.58 20.49 15 14 N -0.83 -23.19 8.87 -173.53 -1.54 -24.72 15 15 O -0.57 -23.87 16.78 -3.02 -0.05 -23.92 15 16 C -0.09 -2.70 6.95 31.18 0.22 -2.48 15 17 C -0.12 -3.04 7.81 31.18 0.24 -2.80 15 18 C -0.12 -3.90 7.09 31.12 0.22 -3.68 15 19 H 0.28 14.59 8.31 -92.71 -0.77 13.82 15 20 H 0.39 21.25 7.86 -92.71 -0.73 20.52 15 21 H 0.41 10.17 8.83 -92.71 -0.82 9.35 15 22 H 0.41 9.71 8.93 -92.71 -0.83 8.88 15 23 H 0.09 2.90 7.54 -2.39 -0.02 2.88 15 24 H 0.09 2.17 8.09 -2.39 -0.02 2.15 15 25 H 0.09 2.11 8.14 -2.39 -0.02 2.10 15 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 15 27 H 0.08 2.66 7.34 -2.39 -0.02 2.64 15 28 H 0.09 2.91 8.09 -2.39 -0.02 2.89 15 Total: -1.00 -68.72 250.22 1.00 -67.72 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -1.16 Total: 41.21 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 3.08 Total: 10.13 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -2.85 Total: -107.33 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -0.10 Total: -56.44 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.72 1.00 -67.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306696321.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.472 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds