Wall clock time and date at job start Sun Mar 29 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38291 * 119.97462 * 264.99789 * 10 9 7 12 12 C 1.38229 * 120.11892 * 179.97438 * 11 10 9 13 13 C 1.38206 * 120.07682 * 0.02562 * 12 11 10 14 14 C 1.38660 * 119.95264 * 359.97438 * 13 12 11 15 15 O 1.35931 * 120.05927 * 180.02562 * 14 13 12 16 16 C 1.38212 * 119.98039 * 84.72595 * 10 9 7 17 17 Cl 1.73597 * 120.03716 * 359.97438 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08003 * 119.94472 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.96535 * 180.02562 * 12 11 10 23 23 H 1.07997 * 120.02365 * 179.97438 * 13 12 11 24 24 H 0.96697 * 113.99740 * 90.00208 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5999 -4.2324 -1.2063 12 6 3.4983 -5.2828 -1.2145 13 6 4.0294 -5.7492 -0.0268 14 6 3.6609 -5.1622 1.1741 15 8 4.1823 -5.6189 2.3435 16 6 2.7625 -4.1034 1.1798 17 17 2.3042 -3.3604 2.6803 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.1860 -3.8700 -2.1358 22 1 3.7856 -5.7397 -2.1499 23 1 4.7309 -6.5703 -0.0341 24 1 5.0018 -5.1785 2.6072 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306707384.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:51 Heat of formation + Delta-G solvation = -37.640883 kcal Electronic energy + Delta-G solvation = -11610.308926 eV Core-core repulsion = 9321.280899 eV Total energy + Delta-G solvation = -2289.028027 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.32129 -36.55708 -35.63425 -33.32162 -31.16200 -29.24356 -27.10495 -23.44770 -22.09556 -20.70807 -17.67610 -16.32908 -16.13313 -15.52403 -14.94650 -14.45620 -13.68597 -12.77445 -12.69942 -12.12228 -11.82331 -11.51668 -11.09637 -10.88380 -10.78480 -10.56250 -10.44343 -10.10077 -9.56178 -9.40778 -8.41334 -8.11001 -7.95482 -6.04251 -4.07313 1.58671 1.78426 2.91390 3.31827 3.36063 3.38917 4.02043 4.44627 4.51220 5.26114 5.31611 5.45925 5.73355 5.90918 6.05329 6.39993 6.65807 6.75244 6.89587 7.22128 7.50635 7.68341 7.87723 7.90210 8.27276 8.95064 9.55483 11.06089 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.037323 B = 0.010383 C = 0.009269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.024366 B = 2695.981818 C = 3019.944484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.045 3.955 10 C -0.015 4.015 11 C -0.124 4.124 12 C -0.106 4.106 13 C -0.164 4.164 14 C 0.104 3.896 15 O -0.493 6.493 16 C -0.063 4.063 17 Cl -0.056 7.056 18 H 0.262 0.738 19 H 0.042 0.958 20 H 0.032 0.968 21 H 0.129 0.871 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.098 -8.399 0.468 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.008 3.992 10 C -0.015 4.015 11 C -0.142 4.142 12 C -0.124 4.124 13 C -0.183 4.183 14 C 0.059 3.941 15 O -0.303 6.303 16 C -0.090 4.090 17 Cl -0.027 7.027 18 H 0.072 0.928 19 H 0.060 0.940 20 H 0.050 0.950 21 H 0.147 0.853 22 H 0.141 0.859 23 H 0.143 0.857 24 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 6.405 -8.583 0.607 10.727 hybrid contribution 0.884 1.303 0.148 1.582 sum 7.290 -7.280 0.755 10.330 Atomic orbital electron populations 1.69942 1.05980 1.26899 1.50320 1.24949 0.94844 0.99078 0.95163 0.86621 0.79575 0.82944 0.78699 1.20214 1.21235 1.20152 1.20849 0.92754 0.89483 1.51231 0.92680 1.18464 0.92465 0.89069 0.99198 1.20615 0.95650 0.95299 0.89978 1.21122 0.98691 0.96362 0.98005 1.21022 0.97175 0.96892 0.97308 1.21081 1.03431 1.02409 0.91337 1.18199 0.96515 0.93752 0.85680 1.84813 1.44261 1.63537 1.37646 1.21297 1.02343 0.96573 0.88824 1.98337 1.91240 1.81819 1.31265 0.92785 0.94013 0.95007 0.85285 0.85942 0.85694 0.75985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 14 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 14 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 14 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 14 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 14 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 14 7 C -0.50 -13.87 9.09 -34.44 -0.31 -14.18 14 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 14 9 C 0.04 1.14 4.61 -29.03 -0.13 1.00 14 10 C -0.01 -0.31 5.07 -104.61 -0.53 -0.84 14 11 C -0.12 -2.27 9.68 -39.56 -0.38 -2.66 14 12 C -0.11 -1.62 10.04 -39.60 -0.40 -2.02 14 13 C -0.16 -2.51 9.99 -39.44 -0.39 -2.91 14 14 C 0.10 1.80 6.70 -39.20 -0.26 1.54 14 15 O -0.49 -7.50 12.97 -19.52 -0.25 -7.75 14 16 C -0.06 -1.28 6.33 -39.36 -0.25 -1.53 14 17 Cl -0.06 -1.15 26.95 -51.86 -1.40 -2.54 14 18 H 0.26 7.30 8.31 -40.82 -0.34 6.96 14 19 H 0.04 1.13 7.13 -51.93 -0.37 0.76 14 20 H 0.03 0.84 8.05 -51.93 -0.42 0.42 14 21 H 0.13 2.23 8.06 -52.48 -0.42 1.81 14 22 H 0.12 1.47 8.06 -52.49 -0.42 1.05 14 23 H 0.13 1.56 8.06 -52.49 -0.42 1.14 14 24 H 0.38 4.13 9.06 45.56 0.41 4.54 14 LS Contribution 235.49 15.07 3.55 3.55 Total: -1.00 -30.26 235.49 -6.33 -36.59 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -1.18 Total: -0.91 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.76 Total: -19.98 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.25 Total: -7.75 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.40 Total: -2.54 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.26 -6.33 -36.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306707384.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.046 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds