Wall clock time and date at job start Sun Mar 29 2020 21:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38291 * 119.97462 * 264.99789 * 10 9 7 12 12 C 1.38229 * 120.11892 * 179.97438 * 11 10 9 13 13 C 1.38206 * 120.07682 * 0.02562 * 12 11 10 14 14 C 1.38660 * 119.95264 * 359.97438 * 13 12 11 15 15 O 1.35931 * 120.05927 * 180.02562 * 14 13 12 16 16 C 1.38212 * 119.98039 * 84.72595 * 10 9 7 17 17 Cl 1.73597 * 120.03716 * 359.97438 * 16 10 9 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08003 * 119.94472 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.96535 * 180.02562 * 12 11 10 23 23 H 1.07997 * 120.02365 * 179.97438 * 13 12 11 24 24 H 0.96697 * 113.99740 * 90.00208 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5999 -4.2324 -1.2063 12 6 3.4983 -5.2828 -1.2145 13 6 4.0294 -5.7492 -0.0268 14 6 3.6609 -5.1622 1.1741 15 8 4.1823 -5.6189 2.3435 16 6 2.7625 -4.1034 1.1798 17 17 2.3042 -3.3604 2.6803 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 2.1860 -3.8700 -2.1358 22 1 3.7856 -5.7397 -2.1499 23 1 4.7309 -6.5703 -0.0341 24 1 5.0018 -5.1785 2.6072 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306707384.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:51 Heat of formation + Delta-G solvation = -57.584674 kcal Electronic energy + Delta-G solvation = -11611.173753 eV Core-core repulsion = 9321.280899 eV Total energy + Delta-G solvation = -2289.892855 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.034 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.67797 -37.88441 -37.15798 -35.28065 -32.88213 -30.61695 -28.91558 -25.34804 -23.44368 -22.24586 -19.01573 -18.44494 -17.49901 -16.94867 -16.57765 -16.09151 -14.99279 -14.55748 -14.31184 -13.74709 -13.57206 -13.07855 -12.85761 -12.57374 -12.36159 -12.28409 -12.01871 -11.81828 -11.53327 -11.07674 -10.56007 -9.49143 -9.46660 -8.17213 -6.27883 0.23290 0.39466 1.40053 1.41561 1.42525 1.50209 2.40392 2.70523 3.14824 3.25637 4.01501 4.15870 4.43140 4.49864 4.74202 4.99339 5.18966 5.32781 5.37927 5.48011 5.75642 5.83762 5.88348 6.18333 6.78620 6.81746 7.38894 8.92817 Molecular weight = 212.03amu Principal moments of inertia in cm(-1) A = 0.037323 B = 0.010383 C = 0.009269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.024366 B = 2695.981818 C = 3019.944484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.054 3.946 10 C -0.048 4.048 11 C -0.135 4.135 12 C -0.087 4.087 13 C -0.148 4.148 14 C 0.108 3.892 15 O -0.496 6.496 16 C -0.087 4.087 17 Cl -0.074 7.074 18 H 0.264 0.736 19 H 0.013 0.987 20 H 0.008 0.992 21 H 0.132 0.868 22 H 0.168 0.832 23 H 0.166 0.834 24 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.392 -9.573 -0.242 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.049 4.049 11 C -0.153 4.153 12 C -0.105 4.105 13 C -0.167 4.167 14 C 0.062 3.938 15 O -0.308 6.308 16 C -0.114 4.114 17 Cl -0.046 7.046 18 H 0.073 0.927 19 H 0.031 0.969 20 H 0.027 0.973 21 H 0.150 0.850 22 H 0.185 0.815 23 H 0.184 0.816 24 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.725 -9.763 -0.098 13.094 hybrid contribution 0.225 1.538 0.368 1.597 sum 8.950 -8.225 0.270 12.159 Atomic orbital electron populations 1.70070 1.07559 1.27775 1.51527 1.25810 0.95651 1.02725 0.94838 0.85600 0.78392 0.78615 0.79082 1.19016 1.20794 1.19679 1.21123 0.92684 0.90719 1.50496 0.92984 1.18150 0.92843 0.90672 0.96577 1.20331 0.96831 0.95673 0.92093 1.21258 0.99734 0.97490 0.96858 1.21446 0.94781 0.94919 0.99359 1.21554 1.02747 1.02281 0.90074 1.18325 0.95659 0.92592 0.87184 1.84762 1.45567 1.63452 1.37010 1.21511 1.03987 0.98184 0.87727 1.98317 1.91618 1.82397 1.32226 0.92736 0.96906 0.97345 0.85048 0.81498 0.81628 0.73509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.68 14 2 C 0.01 0.45 5.46 84.66 0.46 0.91 14 3 Si 0.96 44.30 29.54 68.60 2.03 46.32 14 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 14 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 14 7 C -0.51 -28.81 9.09 25.60 0.23 -28.58 14 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 14 9 C 0.05 2.90 4.61 29.10 0.13 3.03 14 10 C -0.05 -2.11 5.07 -19.86 -0.10 -2.21 14 11 C -0.14 -4.80 9.68 22.28 0.22 -4.58 14 12 C -0.09 -2.31 10.04 22.26 0.22 -2.09 14 13 C -0.15 -3.86 9.99 22.36 0.22 -3.63 14 14 C 0.11 3.47 6.70 22.52 0.15 3.62 14 15 O -0.50 -13.64 12.97 -92.78 -1.20 -14.84 14 16 C -0.09 -3.50 6.33 22.41 0.14 -3.36 14 17 Cl -0.07 -3.13 26.95 -2.72 -0.07 -3.20 14 18 H 0.26 15.01 8.31 -92.70 -0.77 14.24 14 19 H 0.01 0.73 7.13 -2.38 -0.02 0.72 14 20 H 0.01 0.46 8.05 -2.39 -0.02 0.44 14 21 H 0.13 4.47 8.06 -2.91 -0.02 4.44 14 22 H 0.17 2.98 8.06 -2.91 -0.02 2.96 14 23 H 0.17 3.04 8.06 -2.91 -0.02 3.02 14 24 H 0.41 7.46 9.06 -74.06 -0.67 6.79 14 Total: -1.00 -66.70 235.49 3.27 -63.43 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: 0.55 Total: 0.85 kcal Atomic # 6 Polarization: -38.57 SS G_CDS: 1.68 Total: -36.89 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.68 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -1.20 Total: -14.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.07 Total: -3.20 kcal Total: -66.70 3.27 -63.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306707384.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.843 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds