Wall clock time and date at job start Sun Mar 29 2020 22:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 110.65862 * 2 1 4 4 N 1.47319 * 110.59511 * 237.09286 * 2 1 3 5 5 C 1.34526 * 106.61422 * 241.24913 * 4 2 1 6 6 O 1.21543 * 123.76717 * 180.20845 * 5 4 2 7 7 N 1.33787 * 112.46277 * 0.38417 * 5 4 2 8 8 C 1.46500 * 124.18130 * 179.86018 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.70212 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.34762 * 111.64272 * 359.59632 * 7 5 4 19 19 O 1.21233 * 127.16150 * 180.19654 * 18 7 5 20 20 H 1.08998 * 109.46741 * 297.08071 * 1 2 3 21 21 H 1.08992 * 109.47162 * 57.08148 * 1 2 3 22 22 H 1.08997 * 109.47014 * 177.08610 * 1 2 3 23 23 H 0.96995 * 126.69088 * 61.50799 * 4 2 1 24 24 H 1.09002 * 109.47129 * 149.69955 * 8 7 5 25 25 H 1.08998 * 109.46845 * 29.70762 * 8 7 5 26 26 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 27 27 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 28 28 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 7 2.0482 -0.7492 -1.1578 5 6 2.7640 -1.7752 -0.6629 6 8 3.3369 -2.5946 -1.3540 7 7 2.7715 -1.7950 0.6748 8 6 3.4687 -2.8016 1.4791 9 6 2.5253 -3.9729 1.7599 10 6 3.2427 -5.0086 2.5868 11 1 4.2687 -4.8474 2.8827 12 6 2.5888 -6.1616 2.9663 13 7 1.3392 -6.3577 2.6063 14 14 3.4778 -7.4451 3.9918 15 1 3.9110 -6.8390 5.2765 16 1 2.5621 -8.5820 4.2642 17 1 4.6671 -7.9349 3.2495 18 6 2.0634 -0.7712 1.1910 19 8 1.8886 -0.5196 2.3640 20 1 -0.3633 0.4678 0.9150 21 1 -0.3633 0.5584 -0.8626 22 1 -0.3633 -1.0263 -0.0522 23 1 1.9048 -0.5409 -2.0942 24 1 3.7865 -2.3568 2.4221 25 1 4.3419 -3.1607 0.9344 26 1 2.2075 -4.4177 0.8169 27 1 1.6522 -3.6136 2.3046 28 1 0.8793 -7.1691 2.8730 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306764277.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:48 Heat of formation + Delta-G solvation = -80.536177 kcal Electronic energy + Delta-G solvation = -14126.277585 eV Core-core repulsion = 11562.806159 eV Total energy + Delta-G solvation = -2563.471425 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.37126 -39.64641 -37.35829 -36.80255 -34.99558 -32.05141 -31.29273 -27.48427 -25.62945 -24.00006 -23.04483 -21.27484 -19.09049 -18.65048 -17.99468 -17.38189 -16.57178 -16.48905 -16.33392 -15.44946 -15.17668 -14.92367 -14.51691 -14.05072 -13.62767 -13.34243 -12.91488 -12.85605 -12.75812 -12.12393 -12.10255 -11.93830 -11.45796 -11.15349 -10.73397 -10.62424 -10.40749 -8.26536 -6.39970 0.60535 1.25815 1.40475 1.44441 1.52230 1.99138 2.26010 2.39570 2.97873 3.07705 3.75742 3.98248 4.14891 4.40697 4.47722 4.56658 4.70624 4.77216 4.83566 5.20805 5.33367 5.40575 5.69973 5.84986 6.06166 6.15149 6.41774 6.74033 7.14135 7.30027 8.86328 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.045302 B = 0.007893 C = 0.007504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.931321 B = 3546.791480 C = 3730.312191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.107 3.893 3 H 0.174 0.826 4 N -0.702 5.702 5 C 0.694 3.306 6 O -0.586 6.586 7 N -0.583 5.583 8 C 0.133 3.867 9 C 0.024 3.976 10 C -0.547 4.547 11 H 0.071 0.929 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.976 3.024 15 H -0.263 1.263 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.509 3.491 19 O -0.502 6.502 20 H 0.088 0.912 21 H 0.117 0.883 22 H 0.043 0.957 23 H 0.454 0.546 24 H 0.090 0.910 25 H 0.085 0.915 26 H -0.012 1.012 27 H -0.009 1.009 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.809 15.085 -6.468 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.000 4.000 3 H 0.191 0.809 4 N -0.368 5.368 5 C 0.394 3.606 6 O -0.463 6.463 7 N -0.327 5.327 8 C 0.012 3.988 9 C -0.013 4.013 10 C -0.586 4.586 11 H 0.090 0.910 12 C -0.198 4.198 13 N -0.573 5.573 14 Si 0.799 3.201 15 H -0.187 1.187 16 H -0.207 1.207 17 H -0.189 1.189 18 C 0.298 3.702 19 O -0.374 6.374 20 H 0.107 0.893 21 H 0.136 0.864 22 H 0.063 0.937 23 H 0.302 0.698 24 H 0.109 0.891 25 H 0.103 0.897 26 H 0.006 0.994 27 H 0.009 0.991 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.704 14.628 -6.118 15.871 hybrid contribution 0.122 -1.039 0.165 1.059 sum -0.581 13.589 -5.953 14.847 Atomic orbital electron populations 1.22017 0.89117 1.03322 1.06163 1.22310 0.98548 0.98433 0.80739 0.80866 1.45458 1.53357 1.27844 1.10189 1.16128 0.80224 0.82622 0.81580 1.90965 1.50546 1.43072 1.61748 1.46734 1.49203 1.28498 1.08285 1.21713 0.95416 0.87411 0.94244 1.19171 0.94456 0.92610 0.95104 1.21454 0.99553 1.03874 1.33685 0.91050 1.26059 0.95663 1.00729 0.97310 1.70110 1.12306 1.27834 1.47043 0.85346 0.78248 0.77512 0.79010 1.18717 1.20728 1.18931 1.21815 0.76770 0.80581 0.91031 1.90760 1.57674 1.70417 1.18575 0.89274 0.86439 0.93739 0.69816 0.89141 0.89682 0.99381 0.99107 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.63 71.98 0.69 -1.60 15 2 C 0.11 2.02 4.32 44.37 0.19 2.22 15 3 H 0.17 1.73 8.14 -2.39 -0.02 1.71 15 4 N -0.70 -15.16 6.24 -459.60 -2.87 -18.03 15 5 C 0.69 24.51 8.62 179.44 1.55 26.06 15 6 O -0.59 -25.72 17.48 -3.85 -0.07 -25.79 15 7 N -0.58 -22.24 2.60 -773.14 -2.01 -24.25 15 8 C 0.13 5.99 5.64 86.38 0.49 6.47 15 9 C 0.02 1.38 5.30 29.85 0.16 1.54 15 10 C -0.55 -32.16 9.11 25.60 0.23 -31.92 15 11 H 0.07 3.91 7.74 -2.91 -0.02 3.89 15 12 C 0.00 0.04 5.46 84.66 0.46 0.50 15 13 N -0.93 -58.60 13.29 21.45 0.28 -58.31 15 14 Si 0.98 45.09 29.54 68.60 2.03 47.12 15 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 15 17 H -0.26 -11.71 7.11 99.48 0.71 -11.00 15 18 C 0.51 16.60 7.65 87.94 0.67 17.27 15 19 O -0.50 -19.44 17.76 -2.88 -0.05 -19.49 15 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 21 H 0.12 0.90 8.14 -2.39 -0.02 0.88 15 22 H 0.04 0.95 8.14 -2.39 -0.02 0.93 15 23 H 0.45 6.45 8.96 -92.71 -0.83 5.62 15 24 H 0.09 3.88 8.00 -2.39 -0.02 3.86 15 25 H 0.08 3.79 7.85 -2.39 -0.02 3.77 15 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 15 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 Total: -1.00 -78.71 253.68 2.10 -76.61 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 0.34 Total: 1.61 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 4.45 Total: 20.53 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -4.60 Total: -100.60 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -0.12 Total: -45.28 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -78.71 2.10 -76.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306764277.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.925 kcal (2) G-P(sol) polarization free energy of solvation -78.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds