Wall clock time and date at job start Sun Mar 29 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48508 * 109.46957 * 270.00310 * 3 2 1 5 5 H 1.48497 * 109.46959 * 30.00098 * 3 2 1 6 6 H 1.48496 * 109.47367 * 150.00105 * 3 2 1 7 7 C 1.37878 * 120.00021 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99932 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47320 * 179.97438 * 9 7 2 11 11 C 1.39063 * 120.00377 * 179.97438 * 10 9 7 12 12 C 1.39127 * 119.68869 * 0.02562 * 11 10 9 13 13 C 1.38305 * 119.10757 * 179.97438 * 12 11 10 14 14 C 1.38963 * 118.49809 * 0.02562 * 13 12 11 15 15 Cl 1.73596 * 120.35059 * 179.97438 * 14 13 12 16 16 C 1.38130 * 119.30345 * 0.02562 * 14 13 12 17 17 N 1.31984 * 120.83661 * 359.97438 * 16 14 13 18 18 H 0.96995 * 119.99421 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47071 * 59.99494 * 9 7 2 20 20 H 1.08999 * 109.47232 * 300.00209 * 9 7 2 21 21 H 0.97005 * 120.00001 * 0.02562 * 10 9 7 22 22 H 1.07997 * 120.44654 * 0.27227 * 12 11 10 23 23 H 1.07998 * 120.75079 * 180.02562 * 13 12 11 24 24 H 1.07998 * 119.57809 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 1.7395 -4.9238 0.0029 12 6 0.3702 -5.1706 0.0041 13 6 -0.0775 -6.4792 0.0050 14 6 0.8634 -7.5019 0.0053 15 17 0.3548 -9.1617 0.0071 16 6 2.2075 -7.1839 0.0052 17 7 2.6050 -5.9253 0.0043 18 1 -0.4849 0.8401 0.0004 19 1 0.6240 -2.5575 -0.8880 20 1 0.6247 -2.5563 0.8919 21 1 3.1567 -3.4355 0.0010 22 1 -0.3335 -4.3515 -0.0005 23 1 -1.1344 -6.7012 0.0055 24 1 2.9425 -7.9752 0.0058 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306797321.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:02 Heat of formation + Delta-G solvation = 4.580417 kcal Electronic energy + Delta-G solvation = -11201.616650 eV Core-core repulsion = 8946.712228 eV Total energy + Delta-G solvation = -2254.904423 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.14333 -37.64533 -36.76567 -34.62448 -33.36608 -30.93414 -28.46459 -25.35119 -24.27639 -22.88300 -19.38700 -18.09658 -17.69511 -17.10414 -16.53327 -15.73500 -15.36989 -15.07637 -14.41737 -14.11636 -14.01660 -13.39086 -13.03489 -12.82401 -12.70717 -12.19301 -12.07044 -11.49817 -11.05227 -10.80680 -10.54307 -10.49717 -8.51660 -8.32760 -6.46190 0.24874 0.33356 1.24097 1.43022 1.43382 1.54767 2.28358 2.51829 2.83396 3.03592 3.66692 3.90585 4.04716 4.19929 4.78120 4.86415 5.00015 5.05918 5.23228 5.40565 5.59268 5.83241 6.06478 6.61246 6.84359 7.14724 7.29218 8.78622 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.097959 B = 0.005655 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 285.766362 B = 4949.889033 C = 5220.511210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.273 3.727 10 N -0.706 5.706 11 C 0.391 3.609 12 C -0.246 4.246 13 C -0.015 4.015 14 C -0.166 4.166 15 Cl -0.058 7.058 16 C 0.164 3.836 17 N -0.559 5.559 18 H 0.270 0.730 19 H 0.004 0.996 20 H 0.005 0.995 21 H 0.400 0.600 22 H 0.130 0.870 23 H 0.163 0.837 24 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -12.600 0.009 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.186 4.186 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.599 4.599 8 H 0.088 0.912 9 C 0.150 3.850 10 N -0.333 5.333 11 C 0.154 3.846 12 C -0.272 4.272 13 C -0.041 4.041 14 C -0.198 4.198 15 Cl -0.030 7.030 16 C 0.004 3.996 17 N -0.279 5.279 18 H 0.079 0.921 19 H 0.022 0.978 20 H 0.023 0.977 21 H 0.235 0.765 22 H 0.148 0.852 23 H 0.181 0.819 24 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.287 -12.205 0.012 12.273 hybrid contribution -0.446 0.752 -0.011 0.875 sum 0.841 -11.453 0.002 11.484 Atomic orbital electron populations 1.70047 1.07643 1.28633 1.49748 1.25839 0.95816 1.03166 0.93814 0.85274 0.78469 0.77691 0.78543 1.19722 1.20483 1.18854 1.21538 0.94038 0.91110 1.53212 0.91194 1.18767 0.88343 0.82916 0.94976 1.45174 1.10172 1.01511 1.76429 1.18884 0.89849 0.86258 0.89603 1.21519 0.94657 0.98322 1.12690 1.21424 1.00976 0.89888 0.91799 1.21564 0.95095 0.86595 1.16540 1.98325 1.91183 1.15947 1.97516 1.22785 0.93427 0.92331 0.91046 1.67377 1.37954 0.99720 1.22808 0.92062 0.97769 0.97750 0.76486 0.85159 0.81938 0.79631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.10 13.29 21.45 0.28 -51.81 14 2 C 0.01 0.76 5.46 84.65 0.46 1.22 14 3 Si 0.98 41.66 29.54 68.60 2.03 43.69 14 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 14 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 14 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 7 C -0.56 -29.93 9.28 25.60 0.24 -29.69 14 8 H 0.07 3.57 7.60 -2.91 -0.02 3.55 14 9 C 0.27 13.73 4.64 85.64 0.40 14.13 14 10 N -0.71 -30.64 5.72 -348.78 -2.00 -32.64 14 11 C 0.39 15.41 7.65 133.05 1.02 16.43 14 12 C -0.25 -8.86 9.33 22.50 0.21 -8.65 14 13 C -0.01 -0.43 9.97 22.46 0.22 -0.21 14 14 C -0.17 -4.48 6.34 22.42 0.14 -4.33 14 15 Cl -0.06 -1.28 28.98 -2.72 -0.08 -1.36 14 16 C 0.16 4.68 10.97 84.64 0.93 5.61 14 17 N -0.56 -19.95 10.39 -193.15 -2.01 -21.96 14 18 H 0.27 14.31 8.31 -92.71 -0.77 13.54 14 19 H 0.00 0.24 7.92 -2.39 -0.02 0.22 14 20 H 0.00 0.25 7.93 -2.39 -0.02 0.23 14 21 H 0.40 16.70 8.45 -92.70 -0.78 15.91 14 22 H 0.13 4.98 6.71 -2.91 -0.02 4.96 14 23 H 0.16 3.71 8.06 -2.91 -0.02 3.69 14 24 H 0.19 4.01 8.06 -2.91 -0.02 3.99 14 Total: -1.00 -57.46 235.91 2.29 -55.17 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.44 Total: 14.40 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 3.62 Total: -5.49 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -3.72 Total: -106.41 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -57.46 2.29 -55.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306797321.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.748 kcal (2) G-P(sol) polarization free energy of solvation -57.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds