Wall clock time and date at job start Sun Mar 29 2020 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.20842 * 2 1 4 4 C 1.53465 * 109.10043 * 119.45158 * 2 1 3 5 5 N 1.47268 * 107.93212 * 167.15194 * 4 2 1 6 6 C 1.34782 * 121.35017 * 118.51135 * 5 4 2 7 7 O 1.21682 * 120.00290 * 359.71868 * 6 5 4 8 8 C 1.46374 * 119.99326 * 179.97438 * 6 5 4 9 9 H 1.07991 * 120.00397 * 351.97927 * 8 6 5 10 10 C 1.40058 * 119.99589 * 171.98244 * 8 6 5 11 11 N 1.30669 * 119.99974 * 6.00925 * 10 8 6 12 12 Si 1.86795 * 119.99994 * 186.01647 * 10 8 6 13 13 H 1.48497 * 109.47398 * 94.97312 * 12 10 8 14 14 H 1.48499 * 109.47016 * 214.97986 * 12 10 8 15 15 H 1.48500 * 109.47077 * 334.97554 * 12 10 8 16 16 C 1.47050 * 117.29312 * 298.23669 * 5 4 2 17 17 C 1.50436 * 108.88607 * 42.99241 * 16 5 4 18 18 O 1.21287 * 118.48581 * 167.27257 * 17 16 5 19 19 N 1.33378 * 123.02714 * 347.28969 * 17 16 5 20 20 H 1.09000 * 109.47559 * 179.37715 * 1 2 3 21 21 H 1.09002 * 109.47483 * 299.38233 * 1 2 3 22 22 H 1.09008 * 109.47188 * 59.38242 * 1 2 3 23 23 H 1.08996 * 109.85103 * 47.55285 * 4 2 1 24 24 H 1.08998 * 109.83922 * 286.74132 * 4 2 1 25 25 H 0.97001 * 120.00060 * 179.97438 * 11 10 8 26 26 H 1.08997 * 109.56500 * 162.80897 * 16 5 4 27 27 H 1.08998 * 109.56789 * 283.16724 * 16 5 4 28 28 H 0.97005 * 117.70565 * 184.34581 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0322 -0.7130 1.2628 5 7 3.4714 -0.9752 1.0934 6 6 4.3844 -0.4418 1.9292 7 8 4.0260 0.2768 2.8434 8 6 5.8076 -0.7226 1.7337 9 1 6.1181 -1.4564 1.0047 10 6 6.7667 -0.0397 2.4921 11 7 6.3902 0.7604 3.4542 12 14 8.5841 -0.2724 2.1283 13 1 9.0492 0.8063 1.2200 14 1 9.3538 -0.2176 3.3971 15 1 8.7939 -1.5912 1.4787 16 6 3.8713 -1.8475 -0.0208 17 6 3.0778 -1.4719 -1.2424 18 8 3.4257 -1.9142 -2.3168 19 7 2.0094 -0.6747 -1.1984 20 1 -0.3634 -1.0276 -0.0112 21 1 -0.3634 0.5042 0.8955 22 1 -0.3634 0.5234 -0.8845 23 1 1.4995 -1.6550 1.3925 24 1 1.8741 -0.0775 2.1341 25 1 7.0545 1.2331 3.9798 26 1 4.9347 -1.7181 -0.2222 27 1 3.6712 -2.8869 0.2393 28 1 1.5170 -0.5347 -2.0224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306819308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:24 Heat of formation + Delta-G solvation = -71.084330 kcal Electronic energy + Delta-G solvation = -14343.566822 eV Core-core repulsion = 11780.505259 eV Total energy + Delta-G solvation = -2563.061563 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.91369 -37.47542 -35.94199 -33.40174 -32.57450 -30.89067 -27.53108 -26.78741 -24.84397 -22.14703 -20.07400 -18.81459 -17.34306 -16.50527 -15.79912 -15.49462 -15.10674 -14.61704 -14.08554 -13.78940 -13.10037 -12.81223 -12.56431 -12.08463 -11.85605 -11.63420 -11.28831 -11.14144 -11.00650 -10.95620 -10.32824 -10.22930 -9.75698 -8.94564 -8.83845 -7.75779 -7.48077 -6.31499 -4.76608 2.98192 3.10414 3.18344 3.21638 3.53410 3.99434 4.30537 4.42732 4.93276 4.97903 5.23220 5.35286 5.58930 5.68439 5.79508 5.96494 6.04911 6.09403 6.25321 6.35740 6.97558 7.26898 7.35284 7.62312 7.93958 8.18111 8.51685 8.91559 9.21199 10.41766 10.61469 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.010015 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.412558 B = 2795.160673 C = 3351.777861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.121 3.879 3 H 0.075 0.925 4 C 0.109 3.891 5 N -0.646 5.646 6 C 0.561 3.439 7 O -0.572 6.572 8 C -0.545 4.545 9 H 0.074 0.926 10 C 0.089 3.911 11 N -0.765 5.765 12 Si 0.908 3.092 13 H -0.271 1.271 14 H -0.278 1.278 15 H -0.262 1.262 16 C 0.111 3.889 17 C 0.514 3.486 18 O -0.568 6.568 19 N -0.713 5.713 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.270 0.730 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -2.046 -5.110 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.015 3.985 3 H 0.093 0.907 4 C -0.015 4.015 5 N -0.387 5.387 6 C 0.368 3.632 7 O -0.454 6.454 8 C -0.581 4.581 9 H 0.092 0.908 10 C -0.132 4.132 11 N -0.393 5.393 12 Si 0.733 3.267 13 H -0.197 1.197 14 H -0.203 1.203 15 H -0.186 1.186 16 C -0.016 4.016 17 C 0.301 3.699 18 O -0.447 6.447 19 N -0.365 5.365 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.099 0.901 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.273 -1.771 -4.736 8.858 hybrid contribution 0.569 -0.007 -0.555 0.795 sum -6.703 -1.778 -5.291 8.723 Atomic orbital electron populations 1.22115 0.94382 1.02594 1.02742 1.21515 0.93972 0.97145 0.85898 0.90667 1.21655 0.83803 0.99527 0.96554 1.48469 1.04923 1.53297 1.31975 1.18278 0.85638 0.79124 0.80189 1.90601 1.80580 1.41034 1.33200 1.20959 0.89038 1.25027 1.23062 0.90773 1.25724 1.00678 0.93525 0.93257 1.70008 1.35008 1.20281 1.14006 0.86333 0.82236 0.79649 0.78517 1.19678 1.20336 1.18634 1.21561 1.01190 0.95193 0.83636 1.20900 0.80236 0.77184 0.91548 1.90710 1.68447 1.55093 1.30472 1.45565 1.29705 1.48778 1.12419 0.92009 0.90693 0.92281 0.92643 0.87867 0.91902 0.85712 0.90054 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.33 37.16 0.35 -1.31 15 2 C 0.12 1.76 3.86 -68.15 -0.26 1.50 15 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 4 C 0.11 1.93 5.86 -3.38 -0.02 1.91 15 5 N -0.65 -14.10 2.97 -175.53 -0.52 -14.62 15 6 C 0.56 15.33 7.65 -12.99 -0.10 15.23 15 7 O -0.57 -17.63 14.54 5.20 0.08 -17.56 15 8 C -0.54 -14.86 8.76 -35.63 -0.31 -15.17 15 9 H 0.07 1.86 5.99 -52.49 -0.31 1.54 15 10 C 0.09 2.40 5.49 -17.36 -0.10 2.31 15 11 N -0.76 -22.20 11.86 55.55 0.66 -21.54 15 12 Si 0.91 19.72 29.56 -169.99 -5.03 14.70 15 13 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 16 C 0.11 2.14 6.35 -5.02 -0.03 2.11 15 17 C 0.51 9.51 7.84 -11.74 -0.09 9.42 15 18 O -0.57 -11.88 17.80 5.55 0.10 -11.78 15 19 N -0.71 -10.98 5.12 -54.54 -0.28 -11.26 15 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 15 22 H 0.06 0.53 8.14 -51.92 -0.42 0.10 15 23 H 0.06 0.87 8.09 -51.93 -0.42 0.45 15 24 H 0.10 1.98 7.06 -51.93 -0.37 1.62 15 25 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 26 H 0.13 2.54 5.75 -51.93 -0.30 2.24 15 27 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 28 H 0.39 5.18 8.61 -40.82 -0.35 4.83 15 LS Contribution 242.83 15.07 3.66 3.66 Total: -1.00 -33.77 242.83 -4.90 -38.67 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.00 Total: 3.75 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -0.57 Total: 15.99 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.14 Total: -47.43 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: 0.17 Total: -29.34 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -33.77 -4.90 -38.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.416 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds