Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.20842 * 2 1 4 4 C 1.53465 * 109.10043 * 119.45158 * 2 1 3 5 5 N 1.47268 * 107.93212 * 167.15194 * 4 2 1 6 6 C 1.34782 * 121.35017 * 118.51135 * 5 4 2 7 7 O 1.21682 * 120.00290 * 359.71868 * 6 5 4 8 8 C 1.46374 * 119.99326 * 179.97438 * 6 5 4 9 9 H 1.07991 * 120.00397 * 351.97927 * 8 6 5 10 10 C 1.40058 * 119.99589 * 171.98244 * 8 6 5 11 11 N 1.30669 * 119.99974 * 6.00925 * 10 8 6 12 12 Si 1.86795 * 119.99994 * 186.01647 * 10 8 6 13 13 H 1.48497 * 109.47398 * 94.97312 * 12 10 8 14 14 H 1.48499 * 109.47016 * 214.97986 * 12 10 8 15 15 H 1.48500 * 109.47077 * 334.97554 * 12 10 8 16 16 C 1.47050 * 117.29312 * 298.23669 * 5 4 2 17 17 C 1.50436 * 108.88607 * 42.99241 * 16 5 4 18 18 O 1.21287 * 118.48581 * 167.27257 * 17 16 5 19 19 N 1.33378 * 123.02714 * 347.28969 * 17 16 5 20 20 H 1.09000 * 109.47559 * 179.37715 * 1 2 3 21 21 H 1.09002 * 109.47483 * 299.38233 * 1 2 3 22 22 H 1.09008 * 109.47188 * 59.38242 * 1 2 3 23 23 H 1.08996 * 109.85103 * 47.55285 * 4 2 1 24 24 H 1.08998 * 109.83922 * 286.74132 * 4 2 1 25 25 H 0.97001 * 120.00060 * 179.97438 * 11 10 8 26 26 H 1.08997 * 109.56500 * 162.80897 * 16 5 4 27 27 H 1.08998 * 109.56789 * 283.16724 * 16 5 4 28 28 H 0.97005 * 117.70565 * 184.34581 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8886 1.0293 0.0000 4 6 2.0322 -0.7130 1.2628 5 7 3.4714 -0.9752 1.0934 6 6 4.3844 -0.4418 1.9292 7 8 4.0260 0.2768 2.8434 8 6 5.8076 -0.7226 1.7337 9 1 6.1181 -1.4564 1.0047 10 6 6.7667 -0.0397 2.4921 11 7 6.3902 0.7604 3.4542 12 14 8.5841 -0.2724 2.1283 13 1 9.0492 0.8063 1.2200 14 1 9.3538 -0.2176 3.3971 15 1 8.7939 -1.5912 1.4787 16 6 3.8713 -1.8475 -0.0208 17 6 3.0778 -1.4719 -1.2424 18 8 3.4257 -1.9142 -2.3168 19 7 2.0094 -0.6747 -1.1984 20 1 -0.3634 -1.0276 -0.0112 21 1 -0.3634 0.5042 0.8955 22 1 -0.3634 0.5234 -0.8845 23 1 1.4995 -1.6550 1.3925 24 1 1.8741 -0.0775 2.1341 25 1 7.0545 1.2331 3.9798 26 1 4.9347 -1.7181 -0.2222 27 1 3.6712 -2.8869 0.2393 28 1 1.5170 -0.5347 -2.0224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306819308.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = -97.559092 kcal Electronic energy + Delta-G solvation = -14344.714854 eV Core-core repulsion = 11780.505259 eV Total energy + Delta-G solvation = -2564.209594 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.41874 -39.31489 -37.50501 -35.13554 -34.64674 -32.18927 -29.14218 -28.53291 -26.49090 -23.43253 -21.87587 -20.38326 -19.02176 -18.14488 -17.46751 -17.27632 -16.56306 -16.16722 -15.86976 -15.36267 -14.76241 -14.41039 -13.83808 -13.51104 -13.38527 -13.07246 -13.03159 -12.76840 -12.47864 -12.34587 -12.20835 -11.98884 -11.33069 -10.95403 -10.18489 -9.87520 -9.26228 -8.34332 -6.88991 1.40026 1.41063 1.49752 1.56674 2.13848 2.25437 2.41937 2.63366 3.47614 3.54694 3.81059 4.12028 4.15103 4.39059 4.54638 4.60262 4.81190 4.89326 5.05863 5.27670 5.32621 5.49196 5.78889 6.01572 6.19176 6.28348 6.84198 7.07809 7.27529 8.37119 8.60867 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.039349 B = 0.010015 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.412558 B = 2795.160673 C = 3351.777861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.061 0.939 4 C 0.104 3.896 5 N -0.649 5.649 6 C 0.547 3.453 7 O -0.620 6.620 8 C -0.572 4.572 9 H 0.091 0.909 10 C 0.034 3.966 11 N -0.816 5.816 12 Si 0.991 3.009 13 H -0.265 1.265 14 H -0.270 1.270 15 H -0.249 1.249 16 C 0.110 3.890 17 C 0.517 3.483 18 O -0.593 6.593 19 N -0.698 5.698 20 H 0.073 0.927 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.276 0.724 26 H 0.112 0.888 27 H 0.105 0.895 28 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.804 -2.746 -6.384 10.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 H 0.079 0.921 4 C -0.020 4.020 5 N -0.388 5.388 6 C 0.354 3.646 7 O -0.506 6.506 8 C -0.608 4.608 9 H 0.109 0.891 10 C -0.182 4.182 11 N -0.445 5.445 12 Si 0.811 3.189 13 H -0.190 1.190 14 H -0.195 1.195 15 H -0.172 1.172 16 C -0.016 4.016 17 C 0.304 3.696 18 O -0.475 6.475 19 N -0.350 5.350 20 H 0.092 0.908 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.086 0.914 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -7.671 -2.484 -6.051 10.081 hybrid contribution 0.571 0.200 -0.160 0.626 sum -7.100 -2.285 -6.212 9.706 Atomic orbital electron populations 1.22054 0.90325 1.03933 1.04378 1.21479 0.96947 0.95490 0.83969 0.92093 1.21912 0.81662 1.00849 0.97559 1.48221 1.06147 1.52835 1.31554 1.18524 0.86809 0.78937 0.80305 1.90555 1.81630 1.43110 1.35334 1.21483 0.89789 1.25802 1.23740 0.89148 1.26892 1.06224 0.92593 0.92469 1.70152 1.37238 1.21677 1.15480 0.85091 0.75052 0.80164 0.78625 1.19011 1.19515 1.17167 1.21629 1.00797 0.95949 0.83252 1.20629 0.80748 0.77625 0.90608 1.90707 1.69352 1.56483 1.30941 1.45446 1.28723 1.47374 1.13422 0.90811 0.89684 0.90063 0.89953 0.89908 0.91381 0.87051 0.87698 0.75841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.33 71.98 0.67 -1.91 15 2 C 0.13 3.46 3.86 45.31 0.18 3.63 15 3 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 4 C 0.10 3.57 5.86 86.39 0.51 4.08 15 5 N -0.65 -28.29 2.97 -827.46 -2.46 -30.75 15 6 C 0.55 30.63 7.65 86.36 0.66 31.29 15 7 O -0.62 -39.66 14.54 -4.29 -0.06 -39.72 15 8 C -0.57 -31.58 8.76 24.83 0.22 -31.37 15 9 H 0.09 4.52 5.99 -2.92 -0.02 4.50 15 10 C 0.03 1.87 5.49 85.31 0.47 2.34 15 11 N -0.82 -48.60 11.86 21.84 0.26 -48.34 15 12 Si 0.99 40.37 29.56 68.60 2.03 42.40 15 13 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 14 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 15 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 16 C 0.11 4.13 6.35 85.45 0.54 4.68 15 17 C 0.52 18.28 7.84 87.79 0.69 18.97 15 18 O -0.59 -23.91 17.80 -3.05 -0.05 -23.96 15 19 N -0.70 -19.90 5.12 -445.65 -2.28 -22.18 15 20 H 0.07 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.08 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.08 1.11 8.14 -2.38 -0.02 1.09 15 23 H 0.08 2.40 8.09 -2.39 -0.02 2.38 15 24 H 0.08 3.23 7.06 -2.39 -0.02 3.21 15 25 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 26 H 0.11 4.50 5.75 -2.39 -0.01 4.49 15 27 H 0.11 3.44 8.14 -2.39 -0.02 3.42 15 28 H 0.40 9.56 8.61 -92.70 -0.80 8.76 15 Total: -1.00 -74.66 242.83 1.75 -72.91 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.39 Total: 17.92 kcal Atomic # 6 Polarization: 27.78 SS G_CDS: 3.93 Total: 31.71 kcal Atomic # 7 Polarization: -96.79 SS G_CDS: -4.48 Total: -101.27 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -0.12 Total: -63.68 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -74.66 1.75 -72.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819308.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.646 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds