Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.17755 * 2 1 4 4 C 1.52990 * 109.21605 * 240.64327 * 2 1 3 5 5 N 1.47270 * 108.18695 * 286.38787 * 4 2 1 6 6 C 1.34777 * 121.35118 * 118.47169 * 5 4 2 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00307 * 180.27617 * 6 5 4 9 9 H 1.08001 * 119.99387 * 359.73219 * 8 6 5 10 10 C 1.40043 * 120.00458 * 179.72666 * 8 6 5 11 11 N 1.30674 * 120.00000 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47199 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46966 * 119.99861 * 12 10 8 15 15 H 1.48498 * 109.47127 * 239.99959 * 12 10 8 16 16 C 1.47047 * 117.29630 * 298.75178 * 5 4 2 17 17 C 1.50073 * 109.09322 * 42.37695 * 16 5 4 18 18 O 1.21276 * 118.50063 * 167.44593 * 17 16 5 19 19 N 1.33384 * 123.00908 * 347.66952 * 17 16 5 20 20 H 1.08993 * 109.46834 * 179.35970 * 1 2 3 21 21 H 1.08996 * 109.46690 * 299.36178 * 1 2 3 22 22 H 1.08999 * 109.46687 * 59.36133 * 1 2 3 23 23 H 1.09005 * 109.72245 * 166.72491 * 4 2 1 24 24 H 1.09001 * 109.76078 * 46.08649 * 4 2 1 25 25 H 0.97004 * 120.00230 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.56888 * 162.30416 * 16 5 4 27 27 H 1.08997 * 109.56503 * 282.66118 * 16 5 4 28 28 H 0.97001 * 117.70336 * 184.10502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0336 -0.7082 -1.2591 5 7 1.8121 -2.1546 -1.0926 6 6 1.0072 -2.8415 -1.9275 7 8 0.4464 -2.2668 -2.8419 8 6 0.8033 -4.2776 -1.7310 9 1 1.3013 -4.7876 -0.9197 10 6 -0.0375 -4.9902 -2.5950 11 7 -0.6396 -4.3732 -3.5770 12 14 -0.2982 -6.8227 -2.3438 13 1 0.4901 -7.2786 -1.1708 14 1 -1.7394 -7.0895 -2.1051 15 1 0.1471 -7.5567 -3.5555 16 6 2.4997 -2.8178 0.0252 17 6 2.4111 -1.9454 1.2431 18 8 2.7149 -2.4189 2.3175 19 7 2.0094 -0.6743 1.1987 20 1 -0.3633 -1.0276 -0.0115 21 1 -0.3632 0.5039 0.8956 22 1 -0.3633 0.5237 -0.8842 23 1 3.0977 -0.5120 -1.3909 24 1 1.4830 -0.3495 -2.1288 25 1 -1.2223 -4.8666 -4.1752 26 1 2.0243 -3.7775 0.2286 27 1 3.5472 -2.9746 -0.2320 28 1 2.0390 -0.1629 2.0224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306819311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -69.065322 kcal Electronic energy + Delta-G solvation = -14521.534808 eV Core-core repulsion = 11958.560797 eV Total energy + Delta-G solvation = -2562.974012 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97330 -37.50468 -35.84623 -33.30094 -32.56202 -30.72870 -27.40514 -26.78427 -25.01594 -22.30081 -20.00867 -18.54710 -17.36953 -16.44355 -15.78129 -15.69024 -15.02666 -14.17968 -14.04690 -13.80125 -13.49430 -12.71120 -12.29288 -12.17115 -11.55008 -11.46681 -11.28595 -11.10341 -10.94137 -10.86462 -10.33147 -10.19198 -9.74929 -8.95151 -8.85701 -7.74227 -7.46202 -6.30388 -4.76682 2.97159 3.08997 3.18206 3.22605 3.54962 4.00429 4.32270 4.43966 5.00552 5.04883 5.32041 5.41138 5.67324 5.89317 6.02281 6.07399 6.09357 6.21515 6.29532 6.62520 6.97690 7.28320 7.35529 7.62852 7.95108 8.18168 8.51632 8.92036 9.22533 10.43014 10.62321 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.010781 C = 0.009122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.658988 B = 2596.656272 C = 3068.877794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.083 0.917 4 C 0.107 3.893 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.571 6.571 8 C -0.544 4.544 9 H 0.074 0.926 10 C 0.088 3.912 11 N -0.764 5.764 12 Si 0.907 3.093 13 H -0.262 1.262 14 H -0.275 1.275 15 H -0.275 1.275 16 C 0.110 3.890 17 C 0.515 3.485 18 O -0.568 6.568 19 N -0.713 5.713 20 H 0.067 0.933 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.269 0.731 26 H 0.125 0.875 27 H 0.082 0.918 28 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 5.717 5.077 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.018 4.018 5 N -0.384 5.384 6 C 0.368 3.632 7 O -0.453 6.453 8 C -0.580 4.580 9 H 0.092 0.908 10 C -0.132 4.132 11 N -0.393 5.393 12 Si 0.732 3.268 13 H -0.186 1.186 14 H -0.201 1.201 15 H -0.200 1.200 16 C -0.017 4.017 17 C 0.302 3.698 18 O -0.447 6.447 19 N -0.364 5.364 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.080 0.920 26 H 0.142 0.858 27 H 0.099 0.901 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.258 5.622 4.699 8.019 hybrid contribution -0.123 -0.575 0.485 0.762 sum 3.135 5.047 5.184 7.885 Atomic orbital electron populations 1.22170 0.94731 1.03606 1.01323 1.21404 0.95136 0.95892 0.85844 0.89918 1.21553 0.99712 0.83797 0.96711 1.48412 1.51782 1.06419 1.31775 1.18246 0.77013 0.87706 0.80193 1.90607 1.50824 1.70553 1.33273 1.20999 1.29909 0.91824 1.15274 0.90833 1.25719 0.93849 0.99865 0.93773 1.70014 1.21043 1.36523 1.11696 0.86308 0.78719 0.82675 0.79134 1.18554 1.20076 1.20035 1.21491 0.99249 0.97251 0.83680 1.20803 0.75123 0.82354 0.91526 1.90709 1.51127 1.72437 1.30462 1.45512 1.65868 1.12421 1.12600 0.91413 0.93244 0.91357 0.92736 0.87771 0.91982 0.85775 0.90063 0.77625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.38 37.16 0.35 -2.12 15 2 C 0.12 1.77 3.87 -68.40 -0.26 1.50 15 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 4 C 0.11 1.86 5.89 -3.63 -0.02 1.84 15 5 N -0.64 -13.78 2.73 -176.02 -0.48 -14.26 15 6 C 0.56 15.09 7.66 -12.99 -0.10 14.99 15 7 O -0.57 -17.29 14.50 5.20 0.08 -17.21 15 8 C -0.54 -14.70 8.84 -35.63 -0.31 -15.02 15 9 H 0.07 1.84 5.86 -52.49 -0.31 1.53 15 10 C 0.09 2.38 5.50 -17.37 -0.10 2.28 15 11 N -0.76 -22.04 11.83 55.55 0.66 -21.39 15 12 Si 0.91 19.64 29.56 -169.99 -5.02 14.62 15 13 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 16 C 0.11 2.11 6.35 -5.20 -0.03 2.07 15 17 C 0.51 9.42 7.83 -11.91 -0.09 9.32 15 18 O -0.57 -11.82 17.80 5.56 0.10 -11.72 15 19 N -0.71 -10.81 5.00 -54.92 -0.27 -11.08 15 20 H 0.07 1.32 7.97 -51.93 -0.41 0.91 15 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 24 H 0.10 1.98 6.99 -51.93 -0.36 1.62 15 25 H 0.27 7.04 8.29 -40.82 -0.34 6.70 15 26 H 0.12 2.52 5.68 -51.93 -0.29 2.22 15 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 28 H 0.39 5.08 8.80 -40.82 -0.36 4.72 15 LS Contribution 242.34 15.07 3.65 3.65 Total: -1.00 -33.28 242.34 -4.86 -38.13 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -2.99 Total: 4.38 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: -0.57 Total: 14.88 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.10 Total: -46.73 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: 0.17 Total: -28.94 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.28 -4.86 -38.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.932 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds