Wall clock time and date at job start Sun Mar 29 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.17755 * 2 1 4 4 C 1.52990 * 109.21605 * 240.64327 * 2 1 3 5 5 N 1.47270 * 108.18695 * 286.38787 * 4 2 1 6 6 C 1.34777 * 121.35118 * 118.47169 * 5 4 2 7 7 O 1.21693 * 120.00018 * 0.02562 * 6 5 4 8 8 C 1.46377 * 120.00307 * 180.27617 * 6 5 4 9 9 H 1.08001 * 119.99387 * 359.73219 * 8 6 5 10 10 C 1.40043 * 120.00458 * 179.72666 * 8 6 5 11 11 N 1.30674 * 120.00000 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 120.00093 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47199 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46966 * 119.99861 * 12 10 8 15 15 H 1.48498 * 109.47127 * 239.99959 * 12 10 8 16 16 C 1.47047 * 117.29630 * 298.75178 * 5 4 2 17 17 C 1.50073 * 109.09322 * 42.37695 * 16 5 4 18 18 O 1.21276 * 118.50063 * 167.44593 * 17 16 5 19 19 N 1.33384 * 123.00908 * 347.66952 * 17 16 5 20 20 H 1.08993 * 109.46834 * 179.35970 * 1 2 3 21 21 H 1.08996 * 109.46690 * 299.36178 * 1 2 3 22 22 H 1.08999 * 109.46687 * 59.36133 * 1 2 3 23 23 H 1.09005 * 109.72245 * 166.72491 * 4 2 1 24 24 H 1.09001 * 109.76078 * 46.08649 * 4 2 1 25 25 H 0.97004 * 120.00230 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.56888 * 162.30416 * 16 5 4 27 27 H 1.08997 * 109.56503 * 282.66118 * 16 5 4 28 28 H 0.97001 * 117.70336 * 184.10502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0336 -0.7082 -1.2591 5 7 1.8121 -2.1546 -1.0926 6 6 1.0072 -2.8415 -1.9275 7 8 0.4464 -2.2668 -2.8419 8 6 0.8033 -4.2776 -1.7310 9 1 1.3013 -4.7876 -0.9197 10 6 -0.0375 -4.9902 -2.5950 11 7 -0.6396 -4.3732 -3.5770 12 14 -0.2982 -6.8227 -2.3438 13 1 0.4901 -7.2786 -1.1708 14 1 -1.7394 -7.0895 -2.1051 15 1 0.1471 -7.5567 -3.5555 16 6 2.4997 -2.8178 0.0252 17 6 2.4111 -1.9454 1.2431 18 8 2.7149 -2.4189 2.3175 19 7 2.0094 -0.6743 1.1987 20 1 -0.3633 -1.0276 -0.0115 21 1 -0.3632 0.5039 0.8956 22 1 -0.3633 0.5237 -0.8842 23 1 3.0977 -0.5120 -1.3909 24 1 1.4830 -0.3495 -2.1288 25 1 -1.2223 -4.8666 -4.1752 26 1 2.0243 -3.7775 0.2286 27 1 3.5472 -2.9746 -0.2320 28 1 2.0390 -0.1629 2.0224 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306819311.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:25 Heat of formation + Delta-G solvation = -95.046775 kcal Electronic energy + Delta-G solvation = -14522.661449 eV Core-core repulsion = 11958.560797 eV Total energy + Delta-G solvation = -2564.100652 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.46121 -39.29938 -37.45286 -35.01775 -34.61254 -32.10735 -29.08463 -28.51448 -26.69635 -23.69254 -21.83466 -20.00846 -19.06645 -18.03885 -17.56446 -17.30235 -16.63711 -15.85457 -15.62121 -15.35358 -14.98027 -14.45503 -13.96708 -13.68875 -13.25606 -13.11884 -12.89092 -12.79841 -12.48310 -12.25675 -12.14207 -11.96140 -11.30728 -10.95205 -10.18111 -9.83047 -9.21226 -8.31970 -6.87385 1.38697 1.40772 1.50820 1.57129 2.15717 2.27838 2.43323 2.68357 3.51060 3.61370 3.79385 4.09229 4.26225 4.40949 4.57349 4.67132 4.83374 4.85010 4.90198 5.30423 5.33990 5.52567 5.82776 6.04212 6.20987 6.32077 6.86134 7.10822 7.31131 8.41236 8.63110 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.037242 B = 0.010781 C = 0.009122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.658988 B = 2596.656272 C = 3068.877794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.138 0.862 4 C 0.099 3.901 5 N -0.645 5.645 6 C 0.551 3.449 7 O -0.617 6.617 8 C -0.572 4.572 9 H 0.088 0.912 10 C 0.034 3.966 11 N -0.816 5.816 12 Si 0.989 3.011 13 H -0.250 1.250 14 H -0.270 1.270 15 H -0.266 1.266 16 C 0.109 3.891 17 C 0.518 3.482 18 O -0.595 6.595 19 N -0.697 5.697 20 H 0.018 0.982 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.275 0.725 26 H 0.108 0.892 27 H 0.104 0.896 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.411 6.051 6.359 9.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.027 3.973 3 H 0.155 0.845 4 C -0.024 4.024 5 N -0.383 5.383 6 C 0.358 3.642 7 O -0.503 6.503 8 C -0.608 4.608 9 H 0.106 0.894 10 C -0.182 4.182 11 N -0.445 5.445 12 Si 0.809 3.191 13 H -0.173 1.173 14 H -0.195 1.195 15 H -0.191 1.191 16 C -0.018 4.018 17 C 0.305 3.695 18 O -0.476 6.476 19 N -0.348 5.348 20 H 0.037 0.963 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.126 0.874 27 H 0.122 0.878 28 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 4.134 6.012 6.023 9.461 hybrid contribution -0.355 -0.571 0.096 0.679 sum 3.778 5.441 6.119 9.018 Atomic orbital electron populations 1.22135 0.95648 1.00793 1.02854 1.21482 0.94227 0.97821 0.83816 0.84456 1.21836 1.01335 0.81449 0.97810 1.48127 1.50703 1.08215 1.31284 1.18425 0.77278 0.88238 0.80300 1.90561 1.52817 1.71543 1.35364 1.21511 1.30550 0.92705 1.16045 0.89435 1.26856 0.92965 1.05377 0.92971 1.70156 1.22186 1.39081 1.13074 0.85087 0.78849 0.75611 0.79575 1.17305 1.19469 1.19109 1.21541 0.99956 0.96817 0.83441 1.20505 0.75312 0.83161 0.90500 1.90706 1.52744 1.73199 1.30968 1.45355 1.64297 1.11471 1.13667 0.96261 0.90362 0.91274 0.89886 0.89764 0.91483 0.87364 0.87823 0.75707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 9.38 71.98 0.68 -3.89 15 2 C 0.13 3.37 3.87 45.15 0.17 3.55 15 3 H 0.14 2.23 8.14 -2.39 -0.02 2.21 15 4 C 0.10 3.31 5.89 86.23 0.51 3.81 15 5 N -0.64 -27.51 2.73 -829.02 -2.27 -29.78 15 6 C 0.55 30.39 7.66 86.36 0.66 31.05 15 7 O -0.62 -38.83 14.50 -4.33 -0.06 -38.90 15 8 C -0.57 -31.48 8.84 24.83 0.22 -31.26 15 9 H 0.09 4.40 5.86 -2.91 -0.02 4.39 15 10 C 0.03 1.86 5.50 85.30 0.47 2.33 15 11 N -0.82 -48.41 11.83 21.83 0.26 -48.15 15 12 Si 0.99 40.47 29.56 68.60 2.03 42.50 15 13 H -0.25 -9.63 7.11 99.48 0.71 -8.92 15 14 H -0.27 -10.70 7.11 99.48 0.71 -9.99 15 15 H -0.27 -10.44 7.11 99.48 0.71 -9.74 15 16 C 0.11 4.05 6.35 85.33 0.54 4.60 15 17 C 0.52 17.99 7.83 87.68 0.69 18.68 15 18 O -0.59 -23.77 17.80 -3.02 -0.05 -23.82 15 19 N -0.70 -18.99 5.00 -446.83 -2.23 -21.22 15 20 H 0.02 0.73 7.97 -2.39 -0.02 0.71 15 21 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 23 H 0.08 2.31 8.14 -2.38 -0.02 2.29 15 24 H 0.08 3.20 6.99 -2.39 -0.02 3.18 15 25 H 0.28 14.78 8.29 -92.71 -0.77 14.01 15 26 H 0.11 4.39 5.68 -2.39 -0.01 4.38 15 27 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 28 H 0.41 9.02 8.80 -92.71 -0.82 8.20 15 Total: -1.00 -74.60 242.34 1.98 -72.63 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.37 Total: 17.87 kcal Atomic # 6 Polarization: 24.93 SS G_CDS: 3.94 Total: 28.87 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -4.24 Total: -99.15 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -0.12 Total: -62.72 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -74.60 1.98 -72.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306819311.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.422 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds