Wall clock time and date at job start Sun Mar 29 2020 21:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.28323 * 2 1 4 4 C 1.54372 * 110.32400 * 237.87327 * 2 1 3 5 5 N 1.48566 * 104.59367 * 217.14669 * 4 2 1 6 6 C 1.46900 * 111.00074 * 159.03824 * 5 4 2 7 7 C 1.53000 * 109.46798 * 69.87521 * 6 5 4 8 8 C 1.50703 * 109.47290 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99748 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00475 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99565 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00240 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46998 * 89.99491 * 12 10 8 14 14 H 1.48494 * 109.47445 * 209.99663 * 12 10 8 15 15 H 1.48500 * 109.47326 * 330.00208 * 12 10 8 16 16 C 1.48567 * 104.21746 * 39.48304 * 5 4 2 17 17 H 1.09004 * 110.40948 * 79.29550 * 16 5 4 18 18 C 1.52995 * 110.40751 * 201.73390 * 16 5 4 19 19 C 1.54266 * 110.40833 * 122.18030 * 2 1 3 20 20 H 1.09001 * 110.32308 * 0.04878 * 19 2 1 21 21 C 1.52990 * 110.32370 * 237.83697 * 19 2 1 22 22 H 1.08992 * 109.46722 * 180.67161 * 1 2 3 23 23 H 1.09003 * 109.47256 * 300.67468 * 1 2 3 24 24 H 1.09002 * 109.47147 * 60.67231 * 1 2 3 25 25 H 1.08996 * 110.41390 * 98.37285 * 4 2 1 26 26 H 1.08999 * 110.51545 * 335.97491 * 4 2 1 27 27 H 1.08991 * 109.47124 * 189.87629 * 6 5 4 28 28 H 1.09001 * 109.47037 * 309.87882 * 6 5 4 29 29 H 1.09001 * 109.47298 * 299.99930 * 7 6 5 30 30 H 1.09001 * 109.47032 * 60.00357 * 7 6 5 31 31 H 0.96997 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.47066 * 58.55084 * 18 16 5 33 33 H 1.09000 * 109.47099 * 178.54959 * 18 16 5 34 34 H 1.08999 * 109.47642 * 298.54981 * 18 16 5 35 35 H 1.09004 * 109.47062 * 61.46120 * 21 19 2 36 36 H 1.09005 * 109.46961 * 181.45456 * 21 19 2 37 37 H 1.08997 * 109.47597 * 301.45737 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0662 -0.7698 -1.2259 5 7 3.2709 -1.4801 -0.7244 6 6 3.6092 -2.6182 -1.5894 7 6 4.1273 -2.1012 -2.9330 8 6 4.4738 -3.2687 -3.8207 9 1 4.3385 -4.2785 -3.4621 10 6 4.9646 -3.0479 -5.0901 11 7 5.1299 -1.8183 -5.5264 12 14 5.3948 -4.4951 -6.1900 13 1 4.2031 -4.8825 -6.9869 14 1 6.4987 -4.1100 -7.1056 15 1 5.8244 -5.6433 -5.3520 16 6 2.8840 -1.9404 0.6341 17 1 2.2693 -2.8383 0.5705 18 6 4.1293 -2.2037 1.4830 19 6 2.0680 -0.7700 1.2237 20 1 1.2420 -1.1496 1.8252 21 6 2.9691 0.1345 2.0666 22 1 -0.3632 -1.0275 0.0120 23 1 -0.3634 0.5243 0.8839 24 1 -0.3633 0.5034 -0.8960 25 1 2.3378 -0.0761 -2.0215 26 1 1.3245 -1.4845 -1.5825 27 1 4.3802 -3.2218 -1.1106 28 1 2.7201 -3.2272 -1.7528 29 1 3.3563 -1.4976 -3.4118 30 1 5.0164 -1.4922 -2.7696 31 1 5.4748 -1.6629 -6.4196 32 1 4.7228 -1.2918 1.5500 33 1 3.8280 -2.5154 2.4831 34 1 4.7243 -2.9914 1.0208 35 1 2.3913 0.9830 2.4332 36 1 3.3617 -0.4302 2.9123 37 1 3.7961 0.4951 1.4551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306942357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:55 Heat of formation + Delta-G solvation = -20.948209 kcal Electronic energy + Delta-G solvation = -14579.690352 eV Core-core repulsion = 12355.894954 eV Total energy + Delta-G solvation = -2223.795397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.35323 -34.35602 -32.64948 -32.30318 -29.31619 -28.01142 -25.52061 -24.55288 -23.23824 -20.78204 -19.70802 -18.82310 -16.31374 -15.41358 -14.99925 -14.45500 -14.26118 -13.89455 -13.34971 -13.03339 -12.72586 -12.32107 -12.16067 -11.96076 -11.71354 -11.43811 -11.16402 -11.04246 -10.90252 -10.72370 -10.49122 -10.33262 -10.17237 -10.13917 -9.74055 -9.29303 -9.07477 -8.30620 -7.78988 -5.96404 -3.98731 3.33660 3.39740 3.43246 4.43372 4.59455 4.82562 4.85194 5.12531 5.36648 5.39459 5.52303 5.58436 5.65959 5.68965 5.82439 5.85346 5.97253 6.00760 6.09149 6.15074 6.17670 6.29370 6.30555 6.38032 6.47960 6.55335 6.61493 6.66772 7.03805 7.50063 7.58453 7.81300 7.94048 8.12873 8.47620 9.08728 9.64685 11.15023 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045896 B = 0.006823 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.926828 B = 4102.966651 C = 4396.644076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.077 0.923 4 C 0.042 3.958 5 N -0.504 5.504 6 C 0.053 3.947 7 C 0.030 3.970 8 C -0.522 4.522 9 H 0.053 0.947 10 C 0.058 3.942 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.136 4.136 19 C -0.087 4.087 20 H 0.068 0.932 21 C -0.138 4.138 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.024 0.976 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 2.746 13.254 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.095 0.905 4 C -0.086 4.086 5 N -0.228 5.228 6 C -0.074 4.074 7 C -0.007 4.007 8 C -0.560 4.560 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.719 3.281 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.051 4.051 17 H 0.060 0.940 18 C -0.194 4.194 19 C -0.106 4.106 20 H 0.086 0.914 21 C -0.195 4.195 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.274 3.177 13.105 14.872 hybrid contribution -0.479 -1.404 -0.850 1.710 sum -6.752 1.773 12.255 14.104 Atomic orbital electron populations 1.21841 0.95261 1.01496 1.01366 1.22011 0.94846 0.99848 0.94763 0.90462 1.23103 0.91447 0.97459 0.96635 1.65433 1.31834 1.24440 1.01138 1.22486 0.98337 0.90807 0.95805 1.19031 0.96616 0.96321 0.88724 1.21215 1.43005 0.92916 0.98910 0.92881 1.24991 0.95738 0.95574 0.98014 1.69976 1.45962 1.19261 1.18063 0.86605 0.78055 0.82834 0.80563 1.20732 1.21192 1.19908 1.22634 0.95467 0.95651 0.91341 0.93997 1.21778 0.97490 1.02213 0.97877 1.21947 0.97248 0.95533 0.95906 0.91401 1.21861 0.99787 0.98562 0.99316 0.92939 0.92936 0.92583 0.90076 0.94207 0.92132 0.96264 0.96682 0.95793 0.93040 0.91467 0.93153 0.92819 0.93543 0.92768 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.91 37.16 0.33 -1.32 16 2 C -0.10 -1.32 3.30 -89.24 -0.29 -1.61 16 3 H 0.08 1.05 7.71 -51.93 -0.40 0.65 16 4 C 0.04 0.73 5.28 -2.18 -0.01 0.72 16 5 N -0.50 -9.56 5.05 -222.14 -1.12 -10.68 16 6 C 0.05 1.17 4.69 -3.82 -0.02 1.15 16 7 C 0.03 0.82 5.03 -27.88 -0.14 0.68 16 8 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 9 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.06 0.90 2.80 -66.07 -0.19 0.71 16 17 H 0.04 0.67 8.00 -51.93 -0.42 0.25 16 18 C -0.14 -1.92 8.24 37.16 0.31 -1.61 16 19 C -0.09 -1.14 3.22 -89.24 -0.29 -1.43 16 20 H 0.07 0.81 7.71 -51.93 -0.40 0.41 16 21 C -0.14 -1.62 7.69 37.15 0.29 -1.33 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 26 H 0.04 0.71 7.54 -51.93 -0.39 0.32 16 27 H 0.06 1.33 7.27 -51.93 -0.38 0.95 16 28 H 0.02 0.42 7.88 -51.93 -0.41 0.01 16 29 H 0.01 0.42 7.26 -51.93 -0.38 0.05 16 30 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 0.95 6.39 -51.93 -0.33 0.62 16 33 H 0.05 0.59 7.89 -51.93 -0.41 0.18 16 34 H 0.05 0.81 7.36 -51.93 -0.38 0.43 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.58 6.93 -51.93 -0.36 0.22 16 37 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 LS Contribution 286.92 15.07 4.32 4.32 Total: -1.00 -30.16 286.92 -8.21 -38.37 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -6.70 Total: -4.47 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.42 Total: -17.89 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: -0.39 Total: -37.31 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.16 -8.21 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.422 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds