Wall clock time and date at job start Sun Mar 29 2020 21:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 110.28323 * 2 1 4 4 C 1.54372 * 110.32400 * 237.87327 * 2 1 3 5 5 N 1.48566 * 104.59367 * 217.14669 * 4 2 1 6 6 C 1.46900 * 111.00074 * 159.03824 * 5 4 2 7 7 C 1.53000 * 109.46798 * 69.87521 * 6 5 4 8 8 C 1.50703 * 109.47290 * 180.02562 * 7 6 5 9 9 H 1.08006 * 119.99748 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00475 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99565 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00240 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46998 * 89.99491 * 12 10 8 14 14 H 1.48494 * 109.47445 * 209.99663 * 12 10 8 15 15 H 1.48500 * 109.47326 * 330.00208 * 12 10 8 16 16 C 1.48567 * 104.21746 * 39.48304 * 5 4 2 17 17 H 1.09004 * 110.40948 * 79.29550 * 16 5 4 18 18 C 1.52995 * 110.40751 * 201.73390 * 16 5 4 19 19 C 1.54266 * 110.40833 * 122.18030 * 2 1 3 20 20 H 1.09001 * 110.32308 * 0.04878 * 19 2 1 21 21 C 1.52990 * 110.32370 * 237.83697 * 19 2 1 22 22 H 1.08992 * 109.46722 * 180.67161 * 1 2 3 23 23 H 1.09003 * 109.47256 * 300.67468 * 1 2 3 24 24 H 1.09002 * 109.47147 * 60.67231 * 1 2 3 25 25 H 1.08996 * 110.41390 * 98.37285 * 4 2 1 26 26 H 1.08999 * 110.51545 * 335.97491 * 4 2 1 27 27 H 1.08991 * 109.47124 * 189.87629 * 6 5 4 28 28 H 1.09001 * 109.47037 * 309.87882 * 6 5 4 29 29 H 1.09001 * 109.47298 * 299.99930 * 7 6 5 30 30 H 1.09001 * 109.47032 * 60.00357 * 7 6 5 31 31 H 0.96997 * 119.99807 * 180.02562 * 11 10 8 32 32 H 1.09005 * 109.47066 * 58.55084 * 18 16 5 33 33 H 1.09000 * 109.47099 * 178.54959 * 18 16 5 34 34 H 1.08999 * 109.47642 * 298.54981 * 18 16 5 35 35 H 1.09004 * 109.47062 * 61.46120 * 21 19 2 36 36 H 1.09005 * 109.46961 * 181.45456 * 21 19 2 37 37 H 1.08997 * 109.47597 * 301.45737 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0225 0.0000 4 6 2.0662 -0.7698 -1.2259 5 7 3.2709 -1.4801 -0.7244 6 6 3.6092 -2.6182 -1.5894 7 6 4.1273 -2.1012 -2.9330 8 6 4.4738 -3.2687 -3.8207 9 1 4.3385 -4.2785 -3.4621 10 6 4.9646 -3.0479 -5.0901 11 7 5.1299 -1.8183 -5.5264 12 14 5.3948 -4.4951 -6.1900 13 1 4.2031 -4.8825 -6.9869 14 1 6.4987 -4.1100 -7.1056 15 1 5.8244 -5.6433 -5.3520 16 6 2.8840 -1.9404 0.6341 17 1 2.2693 -2.8383 0.5705 18 6 4.1293 -2.2037 1.4830 19 6 2.0680 -0.7700 1.2237 20 1 1.2420 -1.1496 1.8252 21 6 2.9691 0.1345 2.0666 22 1 -0.3632 -1.0275 0.0120 23 1 -0.3634 0.5243 0.8839 24 1 -0.3633 0.5034 -0.8960 25 1 2.3378 -0.0761 -2.0215 26 1 1.3245 -1.4845 -1.5825 27 1 4.3802 -3.2218 -1.1106 28 1 2.7201 -3.2272 -1.7528 29 1 3.3563 -1.4976 -3.4118 30 1 5.0164 -1.4922 -2.7696 31 1 5.4748 -1.6629 -6.4196 32 1 4.7228 -1.2918 1.5500 33 1 3.8280 -2.5154 2.4831 34 1 4.7243 -2.9914 1.0208 35 1 2.3913 0.9830 2.4332 36 1 3.3617 -0.4302 2.9123 37 1 3.7961 0.4951 1.4551 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306942357.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:55 Heat of formation + Delta-G solvation = -39.643538 kcal Electronic energy + Delta-G solvation = -14580.501042 eV Core-core repulsion = 12355.894954 eV Total energy + Delta-G solvation = -2224.606087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.65029 -36.12107 -34.46976 -33.56211 -31.16966 -29.10044 -27.23558 -25.81109 -24.88050 -22.39344 -21.23661 -20.03537 -18.49924 -16.76495 -16.53789 -16.23641 -15.80608 -15.02802 -14.88746 -14.47090 -13.99870 -13.76806 -13.64458 -13.46143 -13.07883 -12.86840 -12.68452 -12.47246 -12.38592 -12.34381 -12.08472 -11.63665 -11.50667 -11.40309 -11.28685 -11.23092 -11.07877 -10.57265 -9.32532 -8.22062 -6.34321 1.38154 1.40298 1.51562 2.38711 3.10870 3.15732 3.64386 3.70856 4.01302 4.21915 4.36278 4.44133 4.50310 4.53161 4.60568 4.66416 4.79051 4.81675 4.87675 4.88575 4.98051 5.05289 5.11686 5.21661 5.23930 5.33138 5.36895 5.43234 5.48971 5.55200 5.64344 5.77493 6.06021 6.20159 6.31979 6.82591 7.34995 8.90256 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.045896 B = 0.006823 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.926828 B = 4102.966651 C = 4396.644076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.038 3.962 5 N -0.520 5.520 6 C 0.071 3.929 7 C 0.041 3.959 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.263 1.263 16 C 0.052 3.948 17 H 0.040 0.960 18 C -0.133 4.133 19 C -0.081 4.081 20 H 0.092 0.908 21 C -0.134 4.134 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.061 0.939 28 H 0.017 0.983 29 H -0.011 1.011 30 H -0.010 1.010 31 H 0.264 0.736 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.596 1.970 14.741 16.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.090 4.090 5 N -0.244 5.244 6 C -0.057 4.057 7 C 0.004 3.996 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.793 3.207 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.187 1.187 16 C -0.056 4.056 17 H 0.058 0.942 18 C -0.190 4.190 19 C -0.100 4.100 20 H 0.110 0.890 21 C -0.192 4.192 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.007 0.993 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.055 2.402 14.613 16.404 hybrid contribution -0.238 -1.110 -1.308 1.732 sum -7.292 1.292 13.305 15.227 Atomic orbital electron populations 1.21809 0.93196 1.01886 1.02559 1.21994 0.96491 0.99274 0.93045 0.90307 1.23119 0.90857 0.97100 0.97958 1.65357 1.33197 1.23339 1.02511 1.22094 0.97972 0.91598 0.94012 1.18834 0.94384 0.95210 0.91217 1.21631 1.43495 0.93602 0.99844 0.92295 1.25997 0.95252 0.98782 0.99668 1.70118 1.46531 1.21791 1.18733 0.85397 0.78087 0.78962 0.78289 1.19646 1.20515 1.18686 1.22810 0.96620 0.96734 0.89404 0.94171 1.21778 0.96573 1.01614 0.99030 1.21974 0.97724 0.94530 0.95729 0.89022 1.21831 0.99082 0.99084 0.99154 0.92966 0.90455 0.92689 0.92833 0.94984 0.92100 0.96488 0.99290 0.99171 0.92696 0.91686 0.90048 0.94441 0.91681 0.91246 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.91 71.98 0.64 -2.22 16 2 C -0.09 -2.33 3.30 -9.90 -0.03 -2.37 16 3 H 0.08 2.05 7.71 -2.38 -0.02 2.03 16 4 C 0.04 1.36 5.28 86.45 0.46 1.82 16 5 N -0.52 -20.11 5.05 -856.73 -4.33 -24.44 16 6 C 0.07 3.25 4.69 86.30 0.40 3.65 16 7 C 0.04 2.32 5.03 29.85 0.15 2.47 16 8 C -0.55 -32.53 9.11 25.60 0.23 -32.29 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 10 C 0.00 0.06 5.46 84.65 0.46 0.52 16 11 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 12 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 16 C 0.05 1.56 2.80 45.06 0.13 1.69 16 17 H 0.04 1.22 8.00 -2.38 -0.02 1.20 16 18 C -0.13 -3.51 8.24 71.98 0.59 -2.92 16 19 C -0.08 -1.91 3.22 -9.90 -0.03 -1.94 16 20 H 0.09 1.80 7.71 -2.39 -0.02 1.78 16 21 C -0.13 -2.77 7.69 71.98 0.55 -2.22 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.05 2.16 7.76 -2.39 -0.02 2.15 16 26 H 0.03 1.18 7.54 -2.39 -0.02 1.16 16 27 H 0.06 2.73 7.27 -2.39 -0.02 2.71 16 28 H 0.02 0.77 7.88 -2.39 -0.02 0.75 16 29 H -0.01 -0.68 7.26 -2.39 -0.02 -0.70 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H 0.06 1.75 6.39 -2.38 -0.02 1.73 16 33 H 0.08 1.65 7.89 -2.39 -0.02 1.63 16 34 H 0.04 1.10 7.36 -2.39 -0.02 1.08 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.23 6.93 -2.38 -0.02 1.21 16 37 H 0.04 1.11 7.54 -2.39 -0.02 1.09 16 Total: -1.00 -66.41 286.92 2.54 -63.87 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: 1.00 Total: 5.27 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.56 Total: -33.82 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -4.04 Total: -82.65 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -66.41 2.54 -63.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942357.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.231 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds