Wall clock time and date at job start Sun Mar 29 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.47095 * 2 1 4 4 C 1.52995 * 109.47415 * 120.00023 * 2 1 3 5 5 C 1.50704 * 109.47193 * 182.32834 * 4 2 1 6 6 H 1.07994 * 120.00078 * 5.20472 * 5 4 2 7 7 C 1.37875 * 119.99923 * 185.20796 * 5 4 2 8 8 N 1.31518 * 119.99932 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46865 * 59.99629 * 9 7 5 11 11 H 1.48495 * 109.47628 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47181 * 300.00399 * 9 7 5 13 13 N 1.46903 * 109.47267 * 240.00621 * 2 1 3 14 14 C 1.46845 * 110.99718 * 300.98741 * 13 2 1 15 15 C 1.53038 * 109.52436 * 185.84203 * 14 13 2 16 16 C 1.53123 * 109.27498 * 300.81976 * 15 14 13 17 17 C 1.53119 * 109.16105 * 57.65513 * 16 15 14 18 18 H 1.09003 * 109.50597 * 62.32650 * 17 16 15 19 19 C 1.53000 * 109.50298 * 182.40314 * 17 16 15 20 20 C 1.46850 * 111.00316 * 65.19868 * 13 2 1 21 21 H 1.08994 * 109.46972 * 299.99690 * 1 2 3 22 22 H 1.09001 * 109.47072 * 59.99754 * 1 2 3 23 23 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47266 * 302.32572 * 4 2 1 25 25 H 1.09005 * 109.46799 * 62.33105 * 4 2 1 26 26 H 0.96997 * 119.99775 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46604 * 65.82386 * 14 13 2 28 28 H 1.09000 * 109.45216 * 305.85289 * 14 13 2 29 29 H 1.09002 * 109.50508 * 180.88080 * 15 14 13 30 30 H 1.08994 * 109.50413 * 60.75827 * 15 14 13 31 31 H 1.09003 * 109.52509 * 297.74896 * 16 15 14 32 32 H 1.09000 * 109.52201 * 177.56036 * 16 15 14 33 33 H 1.09006 * 109.47161 * 59.99881 * 19 17 16 34 34 H 1.08994 * 109.47542 * 299.99981 * 19 17 16 35 35 H 1.09001 * 109.47047 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.46426 * 54.14216 * 20 13 2 37 37 H 1.09008 * 109.45659 * 294.17649 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5460 -0.6714 1.2783 6 1 4.0820 -0.1041 0.5319 7 6 4.2393 -1.3501 2.2579 8 7 3.5865 -2.0406 3.1671 9 14 6.1060 -1.2890 2.2937 10 1 6.5522 0.1190 2.4483 11 1 6.6059 -2.0945 3.4366 12 1 6.6438 -1.8421 1.0247 13 7 2.0197 -0.6924 -1.1995 14 6 1.5296 -2.0759 -1.2454 15 6 2.1738 -2.8078 -2.4250 16 6 1.8225 -2.0787 -3.7249 17 6 2.3007 -0.6271 -3.6320 18 1 3.3852 -0.6074 -3.5238 19 6 1.9005 0.1249 -4.9030 20 6 1.6530 0.0415 -2.4175 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6431 -0.2321 2.1387 25 1 1.7112 -1.7603 1.2285 26 1 4.0743 -2.5178 3.8565 27 1 0.4464 -2.0737 -1.3671 28 1 1.7898 -2.5841 -0.3169 29 1 1.7979 -3.8300 -2.4682 30 1 3.2561 -2.8224 -2.2971 31 1 0.7427 -2.0977 -3.8730 32 1 2.3147 -2.5715 -4.5634 33 1 0.8159 0.1061 -5.0100 34 1 2.3593 -0.3538 -5.7681 35 1 2.2408 1.1582 -4.8361 36 1 2.0024 1.0711 -2.3402 37 1 0.5691 0.0338 -2.5336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306969586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:30 Heat of formation + Delta-G solvation = -21.297090 kcal Electronic energy + Delta-G solvation = -14950.819178 eV Core-core repulsion = 12727.008652 eV Total energy + Delta-G solvation = -2223.810526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.98649 -35.24122 -32.50268 -31.64550 -29.70256 -27.28176 -26.17440 -23.97139 -22.55448 -21.81561 -19.45885 -18.46184 -16.10350 -15.46251 -14.78066 -14.40184 -13.95914 -13.86720 -13.71562 -12.84958 -12.76302 -12.24697 -12.10551 -11.72040 -11.54016 -11.51554 -11.33410 -10.93546 -10.66460 -10.54283 -10.40620 -10.25994 -10.08342 -9.84939 -9.67334 -9.06757 -8.92304 -8.21671 -7.34365 -5.85187 -3.82542 3.43437 3.46825 3.50894 4.58426 4.62646 5.03078 5.17609 5.25609 5.51334 5.52276 5.73603 5.76269 5.82679 5.84848 5.94663 5.96245 6.01413 6.06674 6.10266 6.18248 6.25744 6.36391 6.43042 6.55206 6.57723 6.70584 6.81386 6.87863 7.04798 7.61003 7.76760 8.02525 8.11074 8.17967 8.62415 9.23054 9.78740 11.26857 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032264 B = 0.009299 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.637387 B = 3010.260722 C = 3317.678554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.510 5.510 14 C 0.056 3.944 15 C -0.117 4.117 16 C -0.112 4.112 17 C -0.091 4.091 18 H 0.077 0.923 19 C -0.144 4.144 20 C 0.059 3.941 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.014 0.986 25 H 0.023 0.977 26 H 0.257 0.743 27 H 0.019 0.981 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 1.566 -12.417 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.233 5.233 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.110 4.110 18 H 0.096 0.904 19 C -0.201 4.201 20 C -0.069 4.069 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.334 1.442 -12.230 13.055 hybrid contribution 0.112 0.005 0.065 0.130 sum -4.221 1.447 -12.165 12.958 Atomic orbital electron populations 1.22520 0.99987 1.01238 1.00544 1.21888 0.89912 0.98287 0.92050 0.91465 1.19237 0.96395 0.95520 0.89782 1.21122 0.91443 1.29181 1.10847 0.92228 1.24996 0.97974 0.95942 0.95977 1.69956 1.35176 1.33321 1.16195 0.86697 0.86493 0.77788 0.77195 1.20547 1.21705 1.20374 1.61996 1.59215 1.01324 1.00763 1.22079 0.95305 0.90253 0.99509 1.21585 1.02057 0.97712 0.94112 1.21615 1.00083 0.95505 0.97724 1.21167 1.01266 0.94660 0.93863 0.90425 1.21791 1.00905 1.00108 0.97345 1.22101 0.96677 0.97570 0.90578 0.92684 0.94166 0.92975 0.96763 0.95834 0.93314 0.96269 0.89145 0.92428 0.91017 0.92921 0.92639 0.93196 0.92947 0.92838 0.91675 0.95912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.28 8.50 37.16 0.32 -2.96 16 2 C 0.09 1.81 2.32 -67.71 -0.16 1.66 16 3 H 0.07 1.43 8.08 -51.92 -0.42 1.01 16 4 C 0.03 0.71 4.22 -27.88 -0.12 0.59 16 5 C -0.49 -13.79 8.77 -34.44 -0.30 -14.10 16 6 H 0.06 1.69 7.75 -52.49 -0.41 1.29 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -27.48 13.29 55.43 0.74 -26.74 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.51 -10.02 4.28 -226.69 -0.97 -10.99 16 14 C 0.06 1.05 4.63 -3.83 -0.02 1.04 16 15 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 16 C -0.11 -1.53 5.29 -26.61 -0.14 -1.68 16 17 C -0.09 -1.29 2.88 -90.54 -0.26 -1.55 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 19 C -0.14 -1.64 9.20 37.16 0.34 -1.30 16 20 C 0.06 0.96 4.31 -3.84 -0.02 0.95 16 21 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 23 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.64 6.18 -51.93 -0.32 0.32 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.34 6.62 -51.93 -0.34 0.00 16 28 H 0.09 1.97 5.99 -51.93 -0.31 1.66 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 37 H 0.02 0.36 6.73 -51.92 -0.35 0.01 16 LS Contribution 282.43 15.07 4.26 4.26 Total: -1.00 -29.49 282.43 -8.23 -37.72 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -6.62 Total: -3.50 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -0.62 Total: -18.03 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: -0.23 Total: -37.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.49 -8.23 -37.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.424 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds