Wall clock time and date at job start Sun Mar 29 2020 21:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09011 * 109.47095 * 2 1 4 4 C 1.52995 * 109.47415 * 120.00023 * 2 1 3 5 5 C 1.50704 * 109.47193 * 182.32834 * 4 2 1 6 6 H 1.07994 * 120.00078 * 5.20472 * 5 4 2 7 7 C 1.37875 * 119.99923 * 185.20796 * 5 4 2 8 8 N 1.31518 * 119.99932 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00218 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46865 * 59.99629 * 9 7 5 11 11 H 1.48495 * 109.47628 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47181 * 300.00399 * 9 7 5 13 13 N 1.46903 * 109.47267 * 240.00621 * 2 1 3 14 14 C 1.46845 * 110.99718 * 300.98741 * 13 2 1 15 15 C 1.53038 * 109.52436 * 185.84203 * 14 13 2 16 16 C 1.53123 * 109.27498 * 300.81976 * 15 14 13 17 17 C 1.53119 * 109.16105 * 57.65513 * 16 15 14 18 18 H 1.09003 * 109.50597 * 62.32650 * 17 16 15 19 19 C 1.53000 * 109.50298 * 182.40314 * 17 16 15 20 20 C 1.46850 * 111.00316 * 65.19868 * 13 2 1 21 21 H 1.08994 * 109.46972 * 299.99690 * 1 2 3 22 22 H 1.09001 * 109.47072 * 59.99754 * 1 2 3 23 23 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47266 * 302.32572 * 4 2 1 25 25 H 1.09005 * 109.46799 * 62.33105 * 4 2 1 26 26 H 0.96997 * 119.99775 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.46604 * 65.82386 * 14 13 2 28 28 H 1.09000 * 109.45216 * 305.85289 * 14 13 2 29 29 H 1.09002 * 109.50508 * 180.88080 * 15 14 13 30 30 H 1.08994 * 109.50413 * 60.75827 * 15 14 13 31 31 H 1.09003 * 109.52509 * 297.74896 * 16 15 14 32 32 H 1.09000 * 109.52201 * 177.56036 * 16 15 14 33 33 H 1.09006 * 109.47161 * 59.99881 * 19 17 16 34 34 H 1.08994 * 109.47542 * 299.99981 * 19 17 16 35 35 H 1.09001 * 109.47047 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.46426 * 54.14216 * 20 13 2 37 37 H 1.09008 * 109.45659 * 294.17649 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5460 -0.6714 1.2783 6 1 4.0820 -0.1041 0.5319 7 6 4.2393 -1.3501 2.2579 8 7 3.5865 -2.0406 3.1671 9 14 6.1060 -1.2890 2.2937 10 1 6.5522 0.1190 2.4483 11 1 6.6059 -2.0945 3.4366 12 1 6.6438 -1.8421 1.0247 13 7 2.0197 -0.6924 -1.1995 14 6 1.5296 -2.0759 -1.2454 15 6 2.1738 -2.8078 -2.4250 16 6 1.8225 -2.0787 -3.7249 17 6 2.3007 -0.6271 -3.6320 18 1 3.3852 -0.6074 -3.5238 19 6 1.9005 0.1249 -4.9030 20 6 1.6530 0.0415 -2.4175 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6431 -0.2321 2.1387 25 1 1.7112 -1.7603 1.2285 26 1 4.0743 -2.5178 3.8565 27 1 0.4464 -2.0737 -1.3671 28 1 1.7898 -2.5841 -0.3169 29 1 1.7979 -3.8300 -2.4682 30 1 3.2561 -2.8224 -2.2971 31 1 0.7427 -2.0977 -3.8730 32 1 2.3147 -2.5715 -4.5634 33 1 0.8159 0.1061 -5.0100 34 1 2.3593 -0.3538 -5.7681 35 1 2.2408 1.1582 -4.8361 36 1 2.0024 1.0711 -2.3402 37 1 0.5691 0.0338 -2.5336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306969586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:30 Heat of formation + Delta-G solvation = -38.886516 kcal Electronic energy + Delta-G solvation = -14951.581913 eV Core-core repulsion = 12727.008652 eV Total energy + Delta-G solvation = -2224.573260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40063 -36.72525 -34.58291 -32.92164 -31.33274 -29.14099 -27.33785 -25.60587 -24.37741 -23.12181 -20.78668 -19.99826 -18.33526 -16.96974 -16.52495 -16.02297 -15.38018 -15.11515 -15.06968 -14.46679 -14.08547 -13.85180 -13.64608 -13.31483 -13.08477 -12.83129 -12.72365 -12.58790 -12.45029 -12.23786 -11.97292 -11.78378 -11.47630 -11.32960 -11.08949 -11.00570 -10.79343 -10.46159 -8.84347 -8.09525 -6.14076 1.41037 1.43933 1.51453 2.47500 3.14380 3.28904 3.89638 4.02791 4.04485 4.20608 4.35175 4.46162 4.49800 4.53419 4.65005 4.72370 4.79109 4.89478 4.91054 4.96279 5.00736 5.12141 5.16721 5.23470 5.23856 5.33449 5.37600 5.43274 5.54289 5.62343 5.72077 5.90160 6.34865 6.51952 6.61165 6.99012 7.51317 9.02418 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032264 B = 0.009299 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.637387 B = 3010.260722 C = 3317.678554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.497 4.497 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.532 5.532 14 C 0.061 3.939 15 C -0.114 4.114 16 C -0.105 4.105 17 C -0.090 4.090 18 H 0.060 0.940 19 C -0.136 4.136 20 C 0.060 3.940 21 H 0.057 0.943 22 H 0.066 0.934 23 H 0.048 0.952 24 H -0.011 1.011 25 H 0.001 0.999 26 H 0.259 0.741 27 H 0.031 0.969 28 H 0.047 0.953 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 2.041 -14.635 15.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.536 4.536 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.256 5.256 14 C -0.067 4.067 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.109 4.109 18 H 0.078 0.922 19 C -0.194 4.194 20 C -0.068 4.068 21 H 0.076 0.924 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.007 0.993 25 H 0.019 0.981 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.382 1.928 -14.465 15.237 hybrid contribution 0.108 -0.146 0.774 0.795 sum -4.274 1.782 -13.691 14.453 Atomic orbital electron populations 1.22372 0.97385 1.01453 1.01954 1.21609 0.91975 0.97150 0.90809 0.91968 1.19094 0.95313 0.94508 0.91421 1.21413 0.92889 1.28761 1.10505 0.92666 1.25837 1.02899 0.95648 0.95661 1.70087 1.37041 1.34238 1.16919 0.85642 0.80650 0.78197 0.77349 1.19531 1.21217 1.19778 1.61906 1.60164 1.01935 1.01570 1.21972 0.96190 0.89824 0.98728 1.21568 1.00472 0.98748 0.94436 1.21584 1.01078 0.94863 0.96699 1.21166 1.00033 0.95343 0.94322 0.92193 1.21722 1.01657 0.99982 0.96012 1.22187 0.97585 0.97330 0.89683 0.92441 0.91536 0.93314 0.99322 0.98111 0.93277 0.95059 0.93451 0.90774 0.93132 0.91611 0.90554 0.92189 0.91478 0.92463 0.91703 0.94697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.00 8.50 71.98 0.61 -5.38 16 2 C 0.09 3.92 2.32 44.91 0.10 4.02 16 3 H 0.06 2.66 8.08 -2.38 -0.02 2.64 16 4 C 0.03 1.80 4.22 29.85 0.13 1.93 16 5 C -0.50 -28.88 8.77 25.60 0.22 -28.65 16 6 H 0.06 3.19 7.75 -2.91 -0.02 3.17 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.60 13.29 21.45 0.28 -58.31 16 9 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.53 -20.78 4.28 -871.10 -3.73 -24.51 16 14 C 0.06 2.28 4.63 86.33 0.40 2.68 16 15 C -0.11 -3.55 6.09 30.65 0.19 -3.36 16 16 C -0.10 -2.57 5.29 30.67 0.16 -2.41 16 17 C -0.09 -2.33 2.88 -10.74 -0.03 -2.36 16 18 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 19 C -0.14 -2.61 9.20 71.98 0.66 -1.95 16 20 C 0.06 1.83 4.31 86.32 0.37 2.20 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.07 1.96 6.66 -2.39 -0.02 1.94 16 23 H 0.05 1.71 6.52 -2.39 -0.02 1.69 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.00 0.04 6.18 -2.38 -0.01 0.02 16 26 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.03 1.08 6.62 -2.39 -0.02 1.07 16 28 H 0.05 2.16 5.99 -2.39 -0.01 2.15 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.03 0.99 6.73 -2.38 -0.02 0.98 16 Total: -1.00 -64.33 282.43 2.86 -61.47 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.00 Total: 6.13 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.28 Total: -33.10 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.45 Total: -82.82 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -64.33 2.86 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.585 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds