Wall clock time and date at job start Sun Mar 29 2020 21:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47113 * 240.00176 * 2 1 3 5 5 C 1.50700 * 109.47231 * 175.99911 * 4 2 1 6 6 H 1.08002 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00078 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47177 * 59.99749 * 9 7 5 11 11 H 1.48497 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48511 * 109.46843 * 300.00038 * 9 7 5 13 13 N 1.46893 * 109.46919 * 119.99912 * 2 1 3 14 14 C 1.46850 * 110.99939 * 53.59796 * 13 2 1 15 15 C 1.53039 * 109.52277 * 174.15917 * 14 13 2 16 16 C 1.53121 * 109.27758 * 59.18196 * 15 14 13 17 17 C 1.53113 * 109.15871 * 302.34154 * 16 15 14 18 18 H 1.08996 * 109.51007 * 297.71399 * 17 16 15 19 19 C 1.53002 * 109.50108 * 177.59523 * 17 16 15 20 20 C 1.46848 * 111.00147 * 289.38989 * 13 2 1 21 21 H 1.09001 * 109.46813 * 59.99781 * 1 2 3 22 22 H 1.08997 * 109.47624 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47324 * 300.00271 * 1 2 3 24 24 H 1.09006 * 109.46538 * 295.99965 * 4 2 1 25 25 H 1.09001 * 109.47214 * 55.99311 * 4 2 1 26 26 H 0.96999 * 120.00291 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46468 * 294.17744 * 14 13 2 28 28 H 1.08999 * 109.46008 * 54.16096 * 14 13 2 29 29 H 1.09002 * 109.50294 * 179.12272 * 15 14 13 30 30 H 1.08997 * 109.50381 * 299.20013 * 15 14 13 31 31 H 1.08995 * 109.52099 * 62.25091 * 16 15 14 32 32 H 1.09000 * 109.51924 * 182.37531 * 16 15 14 33 33 H 1.09002 * 109.47210 * 300.19749 * 19 17 16 34 34 H 1.08997 * 109.47361 * 60.19956 * 19 17 16 35 35 H 1.09002 * 109.47385 * 180.20206 * 19 17 16 36 36 H 1.08993 * 109.46659 * 305.85528 * 20 13 2 37 37 H 1.09003 * 109.46427 * 65.82416 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5438 -0.6359 -1.2998 6 1 4.0819 -0.1194 -0.5188 7 6 4.2326 -1.2183 -2.3426 8 7 3.5774 -1.8486 -3.2929 9 14 6.0966 -1.1132 -2.4049 10 1 6.6693 -1.7544 -1.1941 11 1 6.5916 -1.8131 -3.6175 12 1 6.5107 0.3122 -2.4529 13 7 2.0196 -0.6924 1.1994 14 6 1.4280 -2.0317 1.3122 15 6 2.0675 -2.7761 2.4865 16 6 1.8326 -1.9838 3.7755 17 6 2.4156 -0.5772 3.6141 18 1 3.4921 -0.6451 3.4578 19 6 2.1324 0.2410 4.8755 20 6 1.7659 0.1035 2.4071 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.7364 -1.7675 -1.2141 25 1 1.6193 -0.2505 -2.1378 26 1 4.0619 -2.2580 -4.0267 27 1 0.3548 -1.9417 1.4804 28 1 1.6060 -2.5862 0.3908 29 1 1.6171 -3.7644 2.5796 30 1 3.1385 -2.8793 2.3121 31 1 0.7625 -1.9145 3.9706 32 1 2.3226 -2.4888 4.6079 33 1 1.0556 0.3069 5.0318 34 1 2.5952 -0.2442 5.7349 35 1 2.5444 1.2434 4.7587 36 1 2.1891 1.1000 2.2808 37 1 0.6912 0.1836 2.5702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306969588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:33 Heat of formation + Delta-G solvation = -21.847170 kcal Electronic energy + Delta-G solvation = -14917.991170 eV Core-core repulsion = 12694.156791 eV Total energy + Delta-G solvation = -2223.834379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.99457 -35.24441 -32.51999 -31.64408 -29.73299 -27.24739 -26.21984 -23.96779 -22.56462 -21.84670 -19.44561 -18.50152 -16.10191 -15.46819 -14.80149 -14.40784 -13.97873 -13.85799 -13.73382 -12.84753 -12.79301 -12.26168 -12.09124 -11.70747 -11.54398 -11.51449 -11.35234 -10.96262 -10.67902 -10.53730 -10.42631 -10.27924 -10.07828 -9.88302 -9.68484 -9.09185 -8.91896 -8.21195 -7.35723 -5.84558 -3.81916 3.43634 3.47016 3.51006 4.57915 4.61465 5.01868 5.16293 5.23645 5.49488 5.52239 5.72497 5.75413 5.81223 5.83500 5.93005 5.95225 6.00010 6.04965 6.09021 6.16901 6.23681 6.34400 6.41238 6.54469 6.55611 6.68125 6.78180 6.83325 7.05782 7.61494 7.76119 8.01170 8.11221 8.18131 8.63761 9.23843 9.79349 11.27540 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.009153 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.246984 B = 3058.340378 C = 3360.404993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.067 0.933 4 C 0.030 3.970 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.511 5.511 14 C 0.057 3.943 15 C -0.117 4.117 16 C -0.111 4.111 17 C -0.091 4.091 18 H 0.078 0.922 19 C -0.144 4.144 20 C 0.060 3.940 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.257 0.743 27 H 0.021 0.979 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.809 1.453 12.739 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.007 4.007 5 C -0.527 4.527 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.234 5.234 14 C -0.071 4.071 15 C -0.155 4.155 16 C -0.149 4.149 17 C -0.110 4.110 18 H 0.096 0.904 19 C -0.202 4.202 20 C -0.068 4.068 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.035 0.965 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.265 1.302 12.521 13.292 hybrid contribution 0.124 0.101 -0.054 0.169 sum -4.141 1.403 12.467 13.212 Atomic orbital electron populations 1.22520 0.99919 1.01275 1.00514 1.21906 0.89956 0.98255 0.92019 0.91434 1.19193 0.96346 0.95319 0.89816 1.21140 0.91683 1.33221 1.06611 0.92204 1.25004 0.97962 0.95971 0.96001 1.69955 1.35223 1.37341 1.12126 0.86697 0.86484 0.77956 0.77033 1.20392 1.21697 1.20540 1.61999 1.58437 1.01811 1.01127 1.22065 0.94782 0.91098 0.99165 1.21589 1.02186 0.97504 0.94223 1.21607 0.99981 0.95657 0.97663 1.21169 1.01236 0.94627 0.93935 0.90375 1.21790 1.01076 0.99896 0.97390 1.22098 0.97103 0.97036 0.90606 0.92653 0.92871 0.94277 0.96315 0.96452 0.93319 0.96086 0.89623 0.92421 0.90994 0.92913 0.92604 0.93194 0.92943 0.92808 0.91580 0.96005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 8.44 37.16 0.31 -2.95 16 2 C 0.09 1.81 2.26 -67.71 -0.15 1.66 16 3 H 0.07 1.44 7.98 -51.93 -0.41 1.03 16 4 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 5 C -0.49 -13.87 8.81 -34.44 -0.30 -14.18 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.59 13.29 55.43 0.74 -26.86 16 9 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.51 -9.98 4.29 -226.69 -0.97 -10.95 16 14 C 0.06 1.04 4.53 -3.83 -0.02 1.02 16 15 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 16 C -0.11 -1.51 5.29 -26.61 -0.14 -1.65 16 17 C -0.09 -1.29 2.88 -90.54 -0.26 -1.55 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 19 C -0.14 -1.64 9.20 37.16 0.34 -1.30 16 20 C 0.06 0.97 4.42 -3.83 -0.02 0.96 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.94 6.46 -51.93 -0.34 0.61 16 23 H 0.04 0.62 6.84 -51.93 -0.36 0.27 16 24 H 0.02 0.51 6.28 -51.93 -0.33 0.18 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 28 H 0.09 1.80 6.17 -51.93 -0.32 1.48 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 37 H 0.02 0.34 6.89 -51.93 -0.36 -0.01 16 LS Contribution 282.85 15.07 4.26 4.26 Total: -1.00 -29.69 282.85 -8.25 -37.93 By element: Atomic # 1 Polarization: 2.88 SS G_CDS: -6.63 Total: -3.75 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.62 Total: -17.97 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.24 Total: -37.81 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.69 -8.25 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.088 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds