Wall clock time and date at job start Sun Mar 29 2020 21:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47113 * 240.00176 * 2 1 3 5 5 C 1.50700 * 109.47231 * 175.99911 * 4 2 1 6 6 H 1.08002 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00078 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00043 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99902 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47177 * 59.99749 * 9 7 5 11 11 H 1.48497 * 109.47103 * 180.02562 * 9 7 5 12 12 H 1.48511 * 109.46843 * 300.00038 * 9 7 5 13 13 N 1.46893 * 109.46919 * 119.99912 * 2 1 3 14 14 C 1.46850 * 110.99939 * 53.59796 * 13 2 1 15 15 C 1.53039 * 109.52277 * 174.15917 * 14 13 2 16 16 C 1.53121 * 109.27758 * 59.18196 * 15 14 13 17 17 C 1.53113 * 109.15871 * 302.34154 * 16 15 14 18 18 H 1.08996 * 109.51007 * 297.71399 * 17 16 15 19 19 C 1.53002 * 109.50108 * 177.59523 * 17 16 15 20 20 C 1.46848 * 111.00147 * 289.38989 * 13 2 1 21 21 H 1.09001 * 109.46813 * 59.99781 * 1 2 3 22 22 H 1.08997 * 109.47624 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47324 * 300.00271 * 1 2 3 24 24 H 1.09006 * 109.46538 * 295.99965 * 4 2 1 25 25 H 1.09001 * 109.47214 * 55.99311 * 4 2 1 26 26 H 0.96999 * 120.00291 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46468 * 294.17744 * 14 13 2 28 28 H 1.08999 * 109.46008 * 54.16096 * 14 13 2 29 29 H 1.09002 * 109.50294 * 179.12272 * 15 14 13 30 30 H 1.08997 * 109.50381 * 299.20013 * 15 14 13 31 31 H 1.08995 * 109.52099 * 62.25091 * 16 15 14 32 32 H 1.09000 * 109.51924 * 182.37531 * 16 15 14 33 33 H 1.09002 * 109.47210 * 300.19749 * 19 17 16 34 34 H 1.08997 * 109.47361 * 60.19956 * 19 17 16 35 35 H 1.09002 * 109.47385 * 180.20206 * 19 17 16 36 36 H 1.08993 * 109.46659 * 305.85528 * 20 13 2 37 37 H 1.09003 * 109.46427 * 65.82416 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5438 -0.6359 -1.2998 6 1 4.0819 -0.1194 -0.5188 7 6 4.2326 -1.2183 -2.3426 8 7 3.5774 -1.8486 -3.2929 9 14 6.0966 -1.1132 -2.4049 10 1 6.6693 -1.7544 -1.1941 11 1 6.5916 -1.8131 -3.6175 12 1 6.5107 0.3122 -2.4529 13 7 2.0196 -0.6924 1.1994 14 6 1.4280 -2.0317 1.3122 15 6 2.0675 -2.7761 2.4865 16 6 1.8326 -1.9838 3.7755 17 6 2.4156 -0.5772 3.6141 18 1 3.4921 -0.6451 3.4578 19 6 2.1324 0.2410 4.8755 20 6 1.7659 0.1035 2.4071 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.7364 -1.7675 -1.2141 25 1 1.6193 -0.2505 -2.1378 26 1 4.0619 -2.2580 -4.0267 27 1 0.3548 -1.9417 1.4804 28 1 1.6060 -2.5862 0.3908 29 1 1.6171 -3.7644 2.5796 30 1 3.1385 -2.8793 2.3121 31 1 0.7625 -1.9145 3.9706 32 1 2.3226 -2.4888 4.6079 33 1 1.0556 0.3069 5.0318 34 1 2.5952 -0.2442 5.7349 35 1 2.5444 1.2434 4.7587 36 1 2.1891 1.1000 2.2808 37 1 0.6912 0.1836 2.5702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306969588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:32 Heat of formation + Delta-G solvation = -39.610923 kcal Electronic energy + Delta-G solvation = -14918.761465 eV Core-core repulsion = 12694.156791 eV Total energy + Delta-G solvation = -2224.604673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39390 -36.72380 -34.59920 -32.91069 -31.35272 -29.13165 -27.35229 -25.60346 -24.37725 -23.14107 -20.76593 -20.02602 -18.33934 -16.95503 -16.54329 -16.03259 -15.36423 -15.11586 -15.06749 -14.46298 -14.11557 -13.82984 -13.63539 -13.33385 -13.07846 -12.82675 -12.71751 -12.61059 -12.44752 -12.27945 -11.95300 -11.76883 -11.47443 -11.35695 -11.09212 -11.01943 -10.80602 -10.46565 -8.84674 -8.09665 -6.14427 1.40904 1.43978 1.51496 2.47400 3.13749 3.28106 3.89326 4.01948 4.04238 4.20567 4.34796 4.45675 4.49506 4.53213 4.64192 4.71385 4.78912 4.89773 4.90206 4.95544 5.00123 5.11942 5.16088 5.23424 5.23606 5.32910 5.37108 5.43407 5.53414 5.62110 5.71977 5.90205 6.35089 6.52476 6.59805 6.99001 7.51078 9.02326 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.009153 C = 0.008330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.246984 B = 3058.340378 C = 3360.404993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.061 0.939 4 C 0.037 3.963 5 C -0.499 4.499 6 H 0.056 0.944 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.534 5.534 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.105 4.105 17 C -0.090 4.090 18 H 0.059 0.941 19 C -0.136 4.136 20 C 0.061 3.939 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.064 0.936 24 H -0.004 1.004 25 H -0.010 1.010 26 H 0.259 0.741 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 1.913 14.959 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.080 0.920 4 C 0.000 4.000 5 C -0.537 4.537 6 H 0.074 0.926 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.258 5.258 14 C -0.068 4.068 15 C -0.152 4.152 16 C -0.142 4.142 17 C -0.109 4.109 18 H 0.077 0.923 19 C -0.194 4.194 20 C -0.067 4.067 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.014 0.986 25 H 0.009 0.991 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.267 1.772 14.760 15.466 hybrid contribution 0.105 -0.050 -0.762 0.771 sum -4.162 1.722 13.998 14.705 Atomic orbital electron populations 1.22372 0.97317 1.01558 1.01865 1.21609 0.92019 0.97057 0.90811 0.92026 1.19046 0.95258 0.94279 0.91464 1.21446 0.93133 1.32798 1.06362 0.92586 1.25862 1.02960 0.95658 0.95684 1.70087 1.37131 1.38300 1.12795 0.85627 0.80543 0.78394 0.77185 1.19786 1.21194 1.19472 1.61894 1.59339 1.02644 1.01878 1.21993 0.95821 0.90426 0.98549 1.21574 1.00642 0.98603 0.94428 1.21579 1.01022 0.94863 0.96760 1.21166 0.99885 0.95492 0.94332 0.92260 1.21723 1.01957 0.99584 0.96128 1.22176 0.98091 0.96608 0.89818 0.92503 0.93085 0.91665 0.98620 0.99136 0.93263 0.94701 0.93555 0.90578 0.93143 0.91544 0.90548 0.92137 0.91460 0.92554 0.91870 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.98 8.44 71.98 0.61 -5.37 16 2 C 0.09 3.94 2.26 44.92 0.10 4.04 16 3 H 0.06 2.64 7.98 -2.39 -0.02 2.62 16 4 C 0.04 1.97 4.37 29.85 0.13 2.10 16 5 C -0.50 -29.09 8.81 25.60 0.23 -28.87 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -58.82 13.29 21.45 0.28 -58.54 16 9 Si 0.96 46.35 29.54 68.60 2.03 48.38 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 13 N -0.53 -20.74 4.29 -871.11 -3.74 -24.48 16 14 C 0.06 2.18 4.53 86.33 0.39 2.57 16 15 C -0.11 -3.45 6.09 30.65 0.19 -3.26 16 16 C -0.10 -2.52 5.29 30.67 0.16 -2.36 16 17 C -0.09 -2.33 2.88 -10.74 -0.03 -2.36 16 18 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 19 C -0.14 -2.62 9.20 71.98 0.66 -1.96 16 20 C 0.06 1.86 4.42 86.33 0.38 2.24 16 21 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.05 1.78 6.46 -2.39 -0.02 1.76 16 23 H 0.06 1.92 6.84 -2.39 -0.02 1.91 16 24 H 0.00 -0.26 6.28 -2.38 -0.01 -0.27 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 27 H 0.03 1.16 6.57 -2.39 -0.02 1.14 16 28 H 0.05 2.03 6.17 -2.39 -0.01 2.01 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.95 8.01 -2.39 -0.02 1.93 16 37 H 0.03 0.98 6.89 -2.39 -0.02 0.97 16 Total: -1.00 -64.73 282.85 2.86 -61.88 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 1.00 Total: 5.87 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 3.28 Total: -33.11 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -3.45 Total: -83.02 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -64.73 2.86 -61.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306969588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.265 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds