Wall clock time and date at job start Sun Mar 29 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.04205 * 2 1 4 4 C 1.54507 * 109.05464 * 241.01169 * 2 1 3 5 5 C 1.50340 * 108.91163 * 162.24957 * 4 2 1 6 6 C 1.54291 * 112.99039 * 92.21139 * 5 4 2 7 7 C 1.54066 * 112.28909 * 318.32372 * 6 5 4 8 8 H 1.09007 * 108.98071 * 79.55195 * 7 6 5 9 9 C 1.52998 * 108.98114 * 198.26693 * 7 6 5 10 10 N 1.44272 * 111.97779 * 318.91406 * 7 6 5 11 11 C 1.46903 * 110.99913 * 219.31326 * 10 7 6 12 12 C 1.50695 * 109.46927 * 299.90527 * 11 10 7 13 13 H 1.07996 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00130 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99991 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47499 * 60.00046 * 16 14 12 18 18 H 1.48501 * 109.47193 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47401 * 299.99923 * 16 14 12 20 20 C 1.45859 * 109.05473 * 118.99391 * 2 1 3 21 21 H 1.09000 * 109.47015 * 300.00136 * 1 2 3 22 22 H 1.09000 * 109.47215 * 59.99365 * 1 2 3 23 23 H 1.08992 * 109.47360 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.57334 * 282.14763 * 4 2 1 25 25 H 1.09000 * 109.57661 * 42.52560 * 4 2 1 26 26 H 1.08999 * 108.78240 * 331.31591 * 5 4 2 27 27 H 1.08998 * 108.81368 * 213.12561 * 5 4 2 28 28 H 1.08994 * 108.92332 * 197.59321 * 6 5 4 29 29 H 1.09004 * 108.84460 * 78.99259 * 6 5 4 30 30 H 1.09000 * 109.47288 * 191.49374 * 9 7 6 31 31 H 1.08992 * 109.47465 * 311.50194 * 9 7 6 32 32 H 1.09010 * 109.46955 * 71.50149 * 9 7 6 33 33 H 1.09000 * 109.47302 * 59.90547 * 11 10 7 34 34 H 1.09000 * 109.46938 * 179.90171 * 11 10 7 35 35 H 0.96999 * 120.00021 * 180.02562 * 15 14 12 36 36 H 1.09005 * 108.79556 * 302.68324 * 20 2 1 37 37 H 1.08999 * 108.79463 * 61.02089 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8857 1.0304 0.0000 4 6 2.0345 -0.7078 -1.2774 5 6 3.4739 -0.3374 -1.5036 6 6 4.4608 -1.3340 -0.8607 7 6 4.0105 -1.7783 0.5441 8 1 3.2416 -2.5446 0.4441 9 6 5.2091 -2.3730 1.2860 10 7 3.4802 -0.6794 1.3138 11 6 3.9047 -0.7667 2.7175 12 6 3.4052 -2.0573 3.3139 13 1 2.8297 -2.7439 2.7108 14 6 3.6821 -2.3613 4.6299 15 7 4.3825 -1.5251 5.3647 16 14 3.0623 -3.9608 5.3694 17 1 3.6238 -5.1073 4.6108 18 1 3.4915 -4.0491 6.7883 19 1 1.5796 -3.9979 5.2971 20 6 2.0062 -0.6683 1.2059 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9494 -1.7875 -1.1545 25 1 1.4383 -0.3876 -2.1320 26 1 3.6517 0.6526 -1.0836 27 1 3.6627 -0.2996 -2.5765 28 1 5.4404 -0.8623 -0.7851 29 1 4.5406 -2.2128 -1.5006 30 1 4.8647 -2.8721 2.1917 31 1 5.7131 -3.0943 0.6428 32 1 5.9036 -1.5760 1.5521 33 1 4.9930 -0.7392 2.7704 34 1 3.4925 0.0746 3.2747 35 1 4.5776 -1.7391 6.2904 36 1 1.5942 -0.1577 2.0764 37 1 1.6483 -1.6978 1.2014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306975315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:48 Heat of formation + Delta-G solvation = -8.630572 kcal Electronic energy + Delta-G solvation = -15256.405572 eV Core-core repulsion = 13033.144308 eV Total energy + Delta-G solvation = -2223.261264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08827 -35.16176 -33.18646 -32.11831 -28.94052 -27.36513 -25.51327 -24.52847 -22.67654 -21.15484 -19.58606 -18.27978 -16.29477 -15.46629 -14.89645 -14.35881 -14.17139 -13.98227 -13.09661 -12.65724 -12.30215 -12.24290 -11.90914 -11.73189 -11.54474 -11.07801 -10.91270 -10.82389 -10.57393 -10.37593 -10.28993 -10.07128 -9.88028 -9.77710 -9.62277 -9.53650 -9.17877 -8.38254 -7.11130 -6.01140 -4.06436 3.27962 3.33497 3.35771 4.40295 4.93726 5.14196 5.27162 5.35351 5.57247 5.64224 5.75973 5.78014 5.99202 6.08236 6.15184 6.23049 6.26465 6.31154 6.37701 6.49327 6.58194 6.68058 6.75374 6.78284 6.84165 6.89675 6.96950 7.10218 7.36968 7.53988 7.59759 7.94421 8.19964 8.35373 8.49152 9.00814 9.54700 11.02775 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.010269 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.656061 B = 2725.878581 C = 3095.122209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.069 0.931 4 C -0.107 4.107 5 C -0.106 4.106 6 C -0.105 4.105 7 C 0.098 3.902 8 H 0.031 0.969 9 C -0.169 4.169 10 N -0.529 5.529 11 C 0.182 3.818 12 C -0.538 4.538 13 H 0.055 0.945 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 C 0.069 3.931 21 H 0.052 0.948 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 1.010 -10.475 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.144 4.144 7 C -0.012 4.012 8 H 0.049 0.951 9 C -0.226 4.226 10 N -0.252 5.252 11 C 0.057 3.943 12 C -0.577 4.577 13 H 0.073 0.927 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.713 3.287 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.059 4.059 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.123 0.877 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -3.167 1.494 -10.469 11.039 hybrid contribution -0.632 -1.714 0.886 2.031 sum -3.799 -0.220 -9.583 10.311 Atomic orbital electron populations 1.21860 0.96065 1.01343 1.01026 1.20235 0.94269 1.00463 0.95551 0.91256 1.21346 0.96080 1.00283 0.96760 1.21129 0.94587 1.00478 0.98176 1.22053 0.98538 0.97708 0.96082 1.21106 0.96405 0.91525 0.92159 0.95062 1.22551 0.97438 1.00341 1.02260 1.62049 1.07169 1.42468 1.13561 1.19965 0.97100 0.95649 0.81615 1.21684 1.34219 1.05425 0.96371 0.92690 1.24954 0.95186 0.96685 0.97117 1.69929 1.38696 1.35890 1.08242 0.86772 0.79328 0.84325 0.78319 1.20253 1.21235 1.20334 1.20758 0.89840 0.98822 0.96464 0.92870 0.93250 0.93118 0.92483 0.93042 0.91732 0.94028 0.92644 0.93609 0.87750 0.95587 0.92855 0.94090 0.95562 0.92786 0.92026 0.95321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.02 37.16 0.34 -1.65 16 2 C -0.09 -1.38 2.46 -93.21 -0.23 -1.61 16 3 H 0.07 1.14 7.59 -51.93 -0.39 0.74 16 4 C -0.11 -1.59 4.94 -27.27 -0.13 -1.72 16 5 C -0.11 -1.61 5.42 -27.38 -0.15 -1.75 16 6 C -0.11 -1.76 5.49 -25.50 -0.14 -1.90 16 7 C 0.10 1.95 1.67 -68.56 -0.11 1.84 16 8 H 0.03 0.65 6.34 -51.93 -0.33 0.33 16 9 C -0.17 -3.54 7.74 37.16 0.29 -3.25 16 10 N -0.53 -11.37 4.45 -232.87 -1.04 -12.40 16 11 C 0.18 4.62 4.52 -4.98 -0.02 4.60 16 12 C -0.54 -14.34 5.35 -34.44 -0.18 -14.53 16 13 H 0.05 1.47 6.56 -52.49 -0.34 1.13 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 16 Si 0.88 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.07 1.37 3.38 -6.71 -0.02 1.34 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.89 7.15 -51.93 -0.37 0.52 16 25 H 0.05 0.66 8.02 -51.93 -0.42 0.25 16 26 H 0.06 1.04 7.38 -51.93 -0.38 0.66 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.93 7.97 -51.93 -0.41 0.51 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.51 5.05 -51.93 -0.26 2.25 16 31 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.05 1.15 6.73 -51.92 -0.35 0.80 16 33 H 0.04 1.11 5.98 -51.93 -0.31 0.80 16 34 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.06 1.30 7.69 -51.93 -0.40 0.90 16 37 H 0.03 0.60 6.62 -51.93 -0.34 0.25 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -27.31 272.22 -8.09 -35.40 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -6.40 Total: -1.29 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -0.47 Total: -16.98 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.30 Total: -37.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.31 -8.09 -35.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.766 kcal (2) G-P(sol) polarization free energy of solvation -27.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds