Wall clock time and date at job start Sun Mar 29 2020 21:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.04205 * 2 1 4 4 C 1.54507 * 109.05464 * 241.01169 * 2 1 3 5 5 C 1.50340 * 108.91163 * 162.24957 * 4 2 1 6 6 C 1.54291 * 112.99039 * 92.21139 * 5 4 2 7 7 C 1.54066 * 112.28909 * 318.32372 * 6 5 4 8 8 H 1.09007 * 108.98071 * 79.55195 * 7 6 5 9 9 C 1.52998 * 108.98114 * 198.26693 * 7 6 5 10 10 N 1.44272 * 111.97779 * 318.91406 * 7 6 5 11 11 C 1.46903 * 110.99913 * 219.31326 * 10 7 6 12 12 C 1.50695 * 109.46927 * 299.90527 * 11 10 7 13 13 H 1.07996 * 120.00408 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00130 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99991 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47499 * 60.00046 * 16 14 12 18 18 H 1.48501 * 109.47193 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47401 * 299.99923 * 16 14 12 20 20 C 1.45859 * 109.05473 * 118.99391 * 2 1 3 21 21 H 1.09000 * 109.47015 * 300.00136 * 1 2 3 22 22 H 1.09000 * 109.47215 * 59.99365 * 1 2 3 23 23 H 1.08992 * 109.47360 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.57334 * 282.14763 * 4 2 1 25 25 H 1.09000 * 109.57661 * 42.52560 * 4 2 1 26 26 H 1.08999 * 108.78240 * 331.31591 * 5 4 2 27 27 H 1.08998 * 108.81368 * 213.12561 * 5 4 2 28 28 H 1.08994 * 108.92332 * 197.59321 * 6 5 4 29 29 H 1.09004 * 108.84460 * 78.99259 * 6 5 4 30 30 H 1.09000 * 109.47288 * 191.49374 * 9 7 6 31 31 H 1.08992 * 109.47465 * 311.50194 * 9 7 6 32 32 H 1.09010 * 109.46955 * 71.50149 * 9 7 6 33 33 H 1.09000 * 109.47302 * 59.90547 * 11 10 7 34 34 H 1.09000 * 109.46938 * 179.90171 * 11 10 7 35 35 H 0.96999 * 120.00021 * 180.02562 * 15 14 12 36 36 H 1.09005 * 108.79556 * 302.68324 * 20 2 1 37 37 H 1.08999 * 108.79463 * 61.02089 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8857 1.0304 0.0000 4 6 2.0345 -0.7078 -1.2774 5 6 3.4739 -0.3374 -1.5036 6 6 4.4608 -1.3340 -0.8607 7 6 4.0105 -1.7783 0.5441 8 1 3.2416 -2.5446 0.4441 9 6 5.2091 -2.3730 1.2860 10 7 3.4802 -0.6794 1.3138 11 6 3.9047 -0.7667 2.7175 12 6 3.4052 -2.0573 3.3139 13 1 2.8297 -2.7439 2.7108 14 6 3.6821 -2.3613 4.6299 15 7 4.3825 -1.5251 5.3647 16 14 3.0623 -3.9608 5.3694 17 1 3.6238 -5.1073 4.6108 18 1 3.4915 -4.0491 6.7883 19 1 1.5796 -3.9979 5.2971 20 6 2.0062 -0.6683 1.2059 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.9494 -1.7875 -1.1545 25 1 1.4383 -0.3876 -2.1320 26 1 3.6517 0.6526 -1.0836 27 1 3.6627 -0.2996 -2.5765 28 1 5.4404 -0.8623 -0.7851 29 1 4.5406 -2.2128 -1.5006 30 1 4.8647 -2.8721 2.1917 31 1 5.7131 -3.0943 0.6428 32 1 5.9036 -1.5760 1.5521 33 1 4.9930 -0.7392 2.7704 34 1 3.4925 0.0746 3.2747 35 1 4.5776 -1.7391 6.2904 36 1 1.5942 -0.1577 2.0764 37 1 1.6483 -1.6978 1.2014 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306975315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:47 Heat of formation + Delta-G solvation = -24.747598 kcal Electronic energy + Delta-G solvation = -15257.104459 eV Core-core repulsion = 13033.144308 eV Total energy + Delta-G solvation = -2223.960151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66403 -36.71859 -34.79922 -33.97286 -30.43137 -29.27037 -26.89859 -26.25147 -24.45267 -22.64397 -21.01759 -19.91377 -18.35072 -17.05189 -16.74325 -15.96021 -15.72302 -15.34768 -14.74614 -14.17197 -14.09628 -13.64371 -13.40085 -13.22118 -12.93204 -12.85697 -12.73395 -12.44708 -12.26170 -12.18736 -11.88677 -11.73093 -11.48467 -11.28216 -11.09029 -11.04102 -10.87263 -10.52362 -8.95487 -8.11326 -6.25966 1.36666 1.36925 1.45012 2.37540 3.11332 3.34759 3.85431 4.09676 4.21948 4.32311 4.35737 4.44875 4.62956 4.71973 4.78147 4.85625 4.93752 4.96434 5.02572 5.13484 5.15221 5.19493 5.27612 5.31138 5.36683 5.48907 5.52129 5.54890 5.59935 5.65043 5.74758 5.83661 6.16090 6.37264 6.72213 6.90935 7.38895 8.89574 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.010269 C = 0.009044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.656061 B = 2725.878581 C = 3095.122209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.102 4.102 5 C -0.105 4.105 6 C -0.101 4.101 7 C 0.096 3.904 8 H 0.023 0.977 9 C -0.162 4.162 10 N -0.529 5.529 11 C 0.197 3.803 12 C -0.534 4.534 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.949 3.051 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.077 3.923 21 H 0.047 0.953 22 H 0.075 0.925 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.020 0.980 34 H -0.006 1.006 35 H 0.264 0.736 36 H 0.037 0.963 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 0.285 -12.575 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.139 4.139 7 C -0.013 4.013 8 H 0.041 0.959 9 C -0.219 4.219 10 N -0.252 5.252 11 C 0.070 3.930 12 C -0.573 4.573 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.774 3.226 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.051 4.051 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.037 0.766 -12.592 13.246 hybrid contribution -0.340 -1.473 1.522 2.145 sum -4.377 -0.708 -11.070 11.925 Atomic orbital electron populations 1.21814 0.93997 1.01762 1.02170 1.20203 0.95982 0.99826 0.94465 0.91546 1.21330 0.96272 0.99617 0.96767 1.21132 0.94301 0.99083 0.99708 1.22001 0.98868 0.99159 0.93894 1.21221 0.95505 0.90804 0.93789 0.95908 1.22390 0.97789 1.00236 1.01488 1.62096 1.08534 1.43350 1.11208 1.19622 0.95482 0.94055 0.83842 1.21794 1.33557 1.05508 0.96470 0.93012 1.25727 0.95455 0.99927 0.97657 1.70051 1.40096 1.37793 1.08554 0.85749 0.78851 0.80452 0.77532 1.19429 1.20874 1.19791 1.20793 0.88409 0.98131 0.97721 0.93343 0.90562 0.93038 0.93180 0.90064 0.92945 0.91089 0.92752 0.91448 0.91123 0.92818 0.94238 0.96205 0.98750 0.92745 0.94469 0.96683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.02 71.98 0.65 -2.85 16 2 C -0.09 -2.61 2.46 -12.47 -0.03 -2.64 16 3 H 0.07 2.08 7.59 -2.39 -0.02 2.06 16 4 C -0.10 -2.70 4.94 30.25 0.15 -2.55 16 5 C -0.10 -2.84 5.42 30.17 0.16 -2.67 16 6 C -0.10 -3.13 5.49 31.39 0.17 -2.95 16 7 C 0.10 3.78 1.67 45.77 0.08 3.86 16 8 H 0.02 0.94 6.34 -2.38 -0.02 0.93 16 9 C -0.16 -6.80 7.74 71.98 0.56 -6.25 16 10 N -0.53 -23.08 4.45 -890.68 -3.96 -27.05 16 11 C 0.20 10.41 4.52 85.55 0.39 10.80 16 12 C -0.53 -29.27 5.35 25.60 0.14 -29.13 16 13 H 0.05 2.82 6.56 -2.91 -0.02 2.80 16 14 C 0.01 0.65 5.46 84.65 0.46 1.11 16 15 N -0.93 -55.03 13.29 21.45 0.28 -54.75 16 16 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 20 C 0.08 3.08 3.38 83.94 0.28 3.36 16 21 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.52 8.13 -2.39 -0.02 1.50 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.05 1.41 7.15 -2.38 -0.02 1.39 16 25 H 0.08 1.71 8.02 -2.39 -0.02 1.69 16 26 H 0.05 1.56 7.38 -2.39 -0.02 1.54 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.70 7.97 -2.39 -0.02 1.68 16 29 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.07 3.46 5.05 -2.39 -0.01 3.45 16 31 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.04 1.73 6.73 -2.38 -0.02 1.72 16 33 H 0.02 1.13 5.98 -2.39 -0.01 1.12 16 34 H -0.01 -0.33 8.00 -2.39 -0.02 -0.35 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.04 1.62 7.69 -2.38 -0.02 1.60 16 37 H 0.01 0.63 6.62 -2.39 -0.02 0.61 16 Total: -1.00 -59.73 272.22 2.37 -57.36 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.01 Total: 8.40 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.01 Total: -29.92 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.68 Total: -81.79 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -59.73 2.37 -57.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.616 kcal (2) G-P(sol) polarization free energy of solvation -59.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds