Wall clock time and date at job start Sun Mar 29 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.63382 * 2 1 4 4 C 1.54315 * 109.63431 * 239.39684 * 2 1 3 5 5 C 1.45870 * 112.18606 * 161.76249 * 4 2 1 6 6 C 1.54311 * 112.18781 * 61.12300 * 5 4 2 7 7 C 1.50446 * 108.49963 * 281.46370 * 6 5 4 8 8 H 1.08999 * 108.81527 * 332.86785 * 7 6 5 9 9 C 1.52995 * 108.81183 * 214.58663 * 7 6 5 10 10 N 1.48008 * 112.82565 * 93.72304 * 7 6 5 11 11 C 1.46904 * 110.99921 * 191.34593 * 10 7 6 12 12 C 1.50695 * 109.46798 * 194.76809 * 11 10 7 13 13 H 1.08004 * 120.00546 * 0.27742 * 12 11 10 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47093 * 60.00328 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00048 * 16 14 12 20 20 C 1.47995 * 114.63156 * 318.09532 * 10 7 6 21 21 H 1.09004 * 109.47152 * 299.60553 * 1 2 3 22 22 H 1.09003 * 109.47312 * 59.60372 * 1 2 3 23 23 H 1.08998 * 109.47408 * 179.60525 * 1 2 3 24 24 H 1.09003 * 108.93651 * 282.46467 * 4 2 1 25 25 H 1.08999 * 108.93520 * 41.15703 * 4 2 1 26 26 H 1.08998 * 108.94062 * 181.82176 * 5 4 2 27 27 H 1.09004 * 108.94242 * 300.42741 * 5 4 2 28 28 H 1.09005 * 109.62945 * 41.16401 * 6 5 4 29 29 H 1.08996 * 109.63715 * 161.56326 * 6 5 4 30 30 H 1.08995 * 109.47559 * 296.69813 * 9 7 6 31 31 H 1.09001 * 109.47458 * 56.70468 * 9 7 6 32 32 H 1.09002 * 109.47149 * 176.70195 * 9 7 6 33 33 H 1.08992 * 109.47223 * 74.76878 * 11 10 7 34 34 H 1.08997 * 109.46992 * 314.76429 * 11 10 7 35 35 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 36 36 H 1.09000 * 108.81302 * 78.95451 * 20 10 7 37 37 H 1.08998 * 108.81499 * 197.33949 * 20 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0485 -0.7399 -1.2510 5 6 3.4418 -0.4208 -1.5417 6 6 4.3857 -0.8302 -0.3916 7 6 4.2895 0.2046 0.6962 8 1 4.0046 1.1577 0.2506 9 6 5.6631 0.3607 1.3516 10 7 3.3005 -0.1489 1.7391 11 6 3.0412 0.9922 2.6272 12 6 2.3307 0.5128 3.8666 13 1 2.0992 -0.5355 3.9851 14 6 1.9815 1.4116 4.8523 15 7 2.2682 2.6872 4.7105 16 14 1.1001 0.8174 6.3884 17 1 1.9494 -0.1762 7.0933 18 1 0.8381 1.9709 7.2861 19 1 -0.1882 0.1852 6.0066 20 6 2.0354 -0.7170 1.2223 21 1 -0.3634 0.5077 0.8935 22 1 -0.3634 0.5200 -0.8864 23 1 -0.3634 -1.0276 -0.0071 24 1 1.9577 -1.8141 -1.0896 25 1 1.4362 -0.4583 -2.1077 26 1 3.7426 -0.9438 -2.4494 27 1 3.5317 0.6528 -1.7078 28 1 4.0855 -1.8022 0.0000 29 1 5.4100 -0.8842 -0.7600 30 1 5.9476 -0.5779 1.8272 31 1 6.4005 0.6214 0.5923 32 1 5.6200 1.1498 2.1022 33 1 2.4173 1.7209 2.1097 34 1 3.9866 1.4569 2.9071 35 1 2.0222 3.3195 5.4038 36 1 2.1970 -1.7657 0.9729 37 1 1.2773 -0.6547 2.0029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306975316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:49 Heat of formation + Delta-G solvation = -17.734718 kcal Electronic energy + Delta-G solvation = -15094.796948 eV Core-core repulsion = 12871.140898 eV Total energy + Delta-G solvation = -2223.656050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.10044 -34.53428 -33.58461 -32.15235 -29.37628 -27.11266 -25.86784 -24.53968 -22.27907 -21.35726 -20.08767 -18.19564 -16.35441 -15.37319 -14.93977 -14.44492 -14.08865 -13.96929 -13.10226 -12.91974 -12.48444 -12.12324 -12.00362 -11.89290 -11.62757 -11.18563 -11.06490 -10.87556 -10.70022 -10.64381 -10.48965 -10.17495 -10.11561 -9.98280 -9.61098 -9.50068 -9.10784 -8.36207 -6.97213 -5.96584 -3.97059 3.36222 3.40156 3.43284 4.46086 4.86713 4.98702 5.15203 5.31779 5.38283 5.50016 5.59749 5.71426 5.84335 5.95053 6.09122 6.11277 6.17793 6.23018 6.30524 6.35266 6.39126 6.42397 6.51072 6.59830 6.65409 6.75475 6.83670 6.90919 7.05286 7.43869 7.49458 7.89939 8.23937 8.36775 8.68504 9.11065 9.66393 11.13864 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033703 B = 0.009883 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.587885 B = 2832.441028 C = 3346.292724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 H 0.068 0.932 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.114 4.114 7 C 0.087 3.913 8 H 0.027 0.973 9 C -0.141 4.141 10 N -0.543 5.543 11 C 0.195 3.805 12 C -0.503 4.503 13 H 0.061 0.939 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.895 3.105 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.072 3.928 21 H 0.059 0.941 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.059 0.941 33 H -0.012 1.012 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.934 -5.415 -10.534 11.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 H 0.086 0.914 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.021 4.021 8 H 0.045 0.955 9 C -0.199 4.199 10 N -0.268 5.268 11 C 0.070 3.930 12 C -0.541 4.541 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.057 4.057 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.006 0.994 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.139 -5.587 -10.176 11.665 hybrid contribution -0.860 0.519 0.392 1.078 sum 0.279 -5.068 -9.784 11.023 Atomic orbital electron populations 1.21792 0.95407 1.01129 1.01370 1.21498 0.95634 1.00459 0.96296 0.91392 1.20600 0.96073 1.00292 0.97761 1.20575 0.95764 1.01108 0.98099 1.21485 0.98627 1.00078 0.94946 1.21165 0.93396 0.95884 0.91666 0.95482 1.21905 0.95380 1.02401 1.00215 1.61934 1.10343 1.36334 1.18184 1.19697 0.96158 0.86708 0.90429 1.21160 1.36429 0.94292 1.02259 0.92041 1.24980 0.96359 0.94851 0.98454 1.69953 1.47772 1.01768 1.34466 0.86607 0.80095 0.78041 0.82926 1.20235 1.21450 1.20349 1.21826 0.92179 0.96693 0.94964 0.92148 0.93697 0.93115 0.92437 0.93096 0.92898 0.92622 0.91074 0.91948 0.92432 0.93745 0.92202 0.99412 0.95135 0.93008 0.93208 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.89 37.16 0.33 -1.82 16 2 C -0.12 -2.03 2.34 -91.21 -0.21 -2.24 16 3 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 4 C -0.11 -1.55 4.70 -29.42 -0.14 -1.69 16 5 C -0.12 -1.62 5.30 -29.42 -0.16 -1.78 16 6 C -0.11 -1.72 5.14 -27.32 -0.14 -1.86 16 7 C 0.09 1.61 1.82 -68.38 -0.12 1.49 16 8 H 0.03 0.53 6.49 -51.93 -0.34 0.20 16 9 C -0.14 -2.49 8.97 37.16 0.33 -2.15 16 10 N -0.54 -11.85 4.36 -229.36 -1.00 -12.85 16 11 C 0.20 5.13 4.53 -4.98 -0.02 5.10 16 12 C -0.50 -14.21 8.17 -34.44 -0.28 -14.49 16 13 H 0.06 1.73 7.39 -52.48 -0.39 1.34 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.07 1.40 4.53 -4.49 -0.02 1.38 16 21 H 0.06 1.03 8.09 -51.93 -0.42 0.61 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 25 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 28 H 0.07 1.12 7.08 -51.93 -0.37 0.75 16 29 H 0.06 0.83 7.63 -51.93 -0.40 0.44 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.04 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.06 1.18 6.45 -51.93 -0.33 0.84 16 33 H -0.01 -0.34 7.65 -51.93 -0.40 -0.73 16 34 H 0.03 0.86 6.20 -51.93 -0.32 0.54 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.05 0.91 6.59 -51.93 -0.34 0.57 16 37 H 0.08 1.80 6.08 -51.93 -0.32 1.48 16 LS Contribution 276.54 15.07 4.17 4.17 Total: -1.00 -29.13 276.54 -8.05 -37.17 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.40 Total: -2.52 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.53 Total: -16.60 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: -0.26 Total: -39.07 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.13 -8.05 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.440 kcal (2) G-P(sol) polarization free energy of solvation -29.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds