Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.69097 * 2 1 4 4 C 1.53986 * 109.69474 * 239.45482 * 2 1 3 5 5 C 1.45876 * 112.66171 * 158.90084 * 4 2 1 6 6 C 1.54519 * 111.67361 * 61.50145 * 5 4 2 7 7 C 1.50535 * 108.85805 * 282.74598 * 6 5 4 8 8 H 1.09000 * 108.79151 * 330.98154 * 7 6 5 9 9 C 1.52997 * 108.79242 * 212.64977 * 7 6 5 10 10 C 1.53922 * 112.84857 * 91.81261 * 7 6 5 11 11 N 1.44300 * 109.69447 * 120.58450 * 2 1 3 12 12 C 1.46897 * 111.00112 * 341.05794 * 11 2 1 13 13 C 1.50708 * 109.47214 * 189.99747 * 12 11 2 14 14 H 1.08002 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00072 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99857 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47074 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46810 * 120.00130 * 17 15 13 20 20 H 1.48502 * 109.46869 * 239.99744 * 17 15 13 21 21 H 1.09003 * 109.46882 * 180.54531 * 1 2 3 22 22 H 1.08998 * 109.47077 * 300.54204 * 1 2 3 23 23 H 1.08995 * 109.47262 * 60.54341 * 1 2 3 24 24 H 1.09005 * 108.84176 * 38.08073 * 4 2 1 25 25 H 1.09003 * 108.84567 * 279.72577 * 4 2 1 26 26 H 1.08996 * 109.03776 * 300.93441 * 5 4 2 27 27 H 1.08998 * 108.97608 * 182.02562 * 5 4 2 28 28 H 1.09000 * 109.57431 * 162.93690 * 6 5 4 29 29 H 1.09000 * 109.57257 * 42.56094 * 6 5 4 30 30 H 1.09002 * 109.47153 * 58.34810 * 9 7 6 31 31 H 1.09001 * 109.46832 * 298.35001 * 9 7 6 32 32 H 1.09004 * 109.47261 * 178.34982 * 9 7 6 33 33 H 1.08998 * 108.70958 * 78.70041 * 10 7 6 34 34 H 1.09005 * 108.71077 * 196.70478 * 10 7 6 35 35 H 1.08999 * 109.47242 * 309.99429 * 12 11 2 36 36 H 1.09003 * 109.47533 * 69.99771 * 12 11 2 37 37 H 0.96998 * 119.99683 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0489 -0.7368 -1.2486 5 6 3.4208 -0.3733 -1.5861 6 6 4.4040 -0.7407 -0.4521 7 6 4.2838 0.2816 0.6463 8 1 3.9798 1.2327 0.2091 9 6 5.6525 0.4588 1.3067 10 6 3.2608 -0.1175 1.7250 11 7 2.0163 -0.6913 1.1696 12 6 0.9725 -0.7826 2.1991 13 6 1.5777 -1.2839 3.4851 14 1 2.6323 -1.5122 3.5326 15 6 0.7852 -1.4511 4.6008 16 7 -0.4989 -1.1726 4.5430 17 14 1.5356 -2.0717 6.1949 18 1 2.9882 -2.3093 5.9987 19 1 1.3390 -1.0580 7.2621 20 1 0.8758 -3.3418 6.5910 21 1 -0.3633 -1.0277 0.0098 22 1 -0.3633 0.5222 0.8851 23 1 -0.3633 0.5053 -0.8948 24 1 1.4030 -0.4963 -2.0931 25 1 2.0035 -1.8108 -1.0679 26 1 3.4701 0.7007 -1.7655 27 1 3.7135 -0.8992 -2.4948 28 1 5.4231 -0.7430 -0.8388 29 1 4.1577 -1.7278 -0.0608 30 1 6.3800 0.7703 0.5571 31 1 5.9679 -0.4866 1.7483 32 1 5.5848 1.2188 2.0851 33 1 3.7200 -0.8506 2.3881 34 1 3.0055 0.7668 2.3090 35 1 0.5363 0.2028 2.3628 36 1 0.1963 -1.4733 1.8694 37 1 -1.0565 -1.2905 5.3279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306975318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = -11.207566 kcal Electronic energy + Delta-G solvation = -15087.571515 eV Core-core repulsion = 12864.198504 eV Total energy + Delta-G solvation = -2223.373011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.00077 -34.93196 -33.56475 -32.18960 -29.19150 -27.10950 -25.89241 -24.54077 -22.72052 -20.95672 -19.94260 -18.16556 -16.37787 -15.23185 -14.96640 -14.44055 -14.30801 -13.98099 -13.13222 -12.88690 -12.46252 -12.08041 -11.97242 -11.76692 -11.66375 -11.42123 -11.14527 -10.84736 -10.69712 -10.46845 -10.36263 -10.22058 -9.96785 -9.85563 -9.74536 -9.49213 -8.87203 -8.43435 -6.89571 -6.01032 -4.01604 3.31188 3.38737 3.43005 4.44798 4.91525 5.08907 5.26663 5.29518 5.36332 5.56395 5.63330 5.71445 5.91170 6.01059 6.04474 6.10087 6.14089 6.25168 6.35743 6.40579 6.44859 6.49517 6.57140 6.64485 6.69622 6.82834 6.91911 6.94606 7.00625 7.43539 7.60544 7.86330 8.15842 8.34303 8.76389 9.07372 9.62966 11.10201 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.010187 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.088716 B = 2747.871961 C = 3415.913137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.094 3.906 3 H 0.032 0.968 4 C -0.110 4.110 5 C -0.109 4.109 6 C -0.105 4.105 7 C -0.097 4.097 8 H 0.055 0.945 9 C -0.143 4.143 10 C 0.083 3.917 11 N -0.546 5.546 12 C 0.196 3.804 13 C -0.517 4.517 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.062 0.938 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.024 0.976 35 H -0.007 1.007 36 H 0.035 0.965 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.239 2.733 -9.220 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.016 4.016 3 H 0.050 0.950 4 C -0.149 4.149 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.115 4.115 8 H 0.074 0.926 9 C -0.201 4.201 10 C -0.044 4.044 11 N -0.271 5.271 12 C 0.071 3.929 13 C -0.556 4.556 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.210 1.210 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.010 0.990 36 H 0.053 0.947 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.177 2.290 -9.252 11.931 hybrid contribution 0.033 0.516 1.233 1.337 sum 7.210 2.806 -8.019 11.143 Atomic orbital electron populations 1.22133 0.95571 1.02511 1.01054 1.21165 0.93895 0.94734 0.91826 0.94993 1.20568 0.95534 1.01935 0.96840 1.20521 0.96170 1.00232 0.97760 1.21363 0.97490 1.00392 0.94981 1.21072 0.95357 0.98621 0.96498 0.92642 1.21867 0.96389 1.01655 1.00181 1.22230 0.89885 0.97892 0.94438 1.60855 1.05913 1.52755 1.07597 1.19808 0.89543 0.95454 0.88052 1.21472 0.95664 1.43534 0.94882 0.91650 1.24990 0.94818 0.95712 0.98995 1.69971 1.04727 1.49191 1.29741 0.86507 0.79410 0.78439 0.83466 1.19710 1.21173 1.21032 0.91913 0.91579 0.93894 0.93393 0.91361 0.93277 0.93135 0.93129 0.90718 0.93296 0.92603 0.93047 0.90688 0.95746 0.98979 0.94716 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 7.89 37.16 0.29 -2.58 16 2 C 0.09 1.74 2.53 -68.59 -0.17 1.57 16 3 H 0.03 0.60 6.79 -51.93 -0.35 0.25 16 4 C -0.11 -1.75 4.81 -29.59 -0.14 -1.90 16 5 C -0.11 -1.54 5.34 -29.31 -0.16 -1.70 16 6 C -0.10 -1.56 5.13 -27.17 -0.14 -1.69 16 7 C -0.10 -1.54 2.19 -91.37 -0.20 -1.74 16 8 H 0.06 0.88 6.65 -51.93 -0.35 0.54 16 9 C -0.14 -1.98 8.82 37.16 0.33 -1.65 16 10 C 0.08 1.68 3.87 -2.81 -0.01 1.67 16 11 N -0.55 -11.87 4.16 -228.03 -0.95 -12.82 16 12 C 0.20 5.11 3.73 -4.97 -0.02 5.09 16 13 C -0.52 -14.51 8.49 -34.44 -0.29 -14.80 16 14 H 0.07 1.80 5.69 -52.49 -0.30 1.50 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H 0.06 1.21 7.34 -51.93 -0.38 0.82 16 22 H 0.07 1.36 6.20 -51.93 -0.32 1.03 16 23 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 25 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 26 H 0.05 0.67 7.59 -51.93 -0.39 0.27 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.66 7.67 -51.93 -0.40 0.26 16 29 H 0.07 1.25 7.78 -51.93 -0.40 0.84 16 30 H 0.05 0.58 8.03 -51.93 -0.42 0.16 16 31 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.62 6.08 -51.93 -0.32 1.31 16 34 H 0.02 0.53 8.01 -51.93 -0.42 0.12 16 35 H -0.01 -0.21 6.63 -51.93 -0.34 -0.55 16 36 H 0.03 0.97 6.91 -51.93 -0.36 0.61 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -28.86 274.82 -8.11 -36.97 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -6.40 Total: -2.81 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -0.61 Total: -16.22 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: -0.21 Total: -38.80 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.86 -8.11 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.761 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds