Wall clock time and date at job start Sun Mar 29 2020 21:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.69097 * 2 1 4 4 C 1.53986 * 109.69474 * 239.45482 * 2 1 3 5 5 C 1.45876 * 112.66171 * 158.90084 * 4 2 1 6 6 C 1.54519 * 111.67361 * 61.50145 * 5 4 2 7 7 C 1.50535 * 108.85805 * 282.74598 * 6 5 4 8 8 H 1.09000 * 108.79151 * 330.98154 * 7 6 5 9 9 C 1.52997 * 108.79242 * 212.64977 * 7 6 5 10 10 C 1.53922 * 112.84857 * 91.81261 * 7 6 5 11 11 N 1.44300 * 109.69447 * 120.58450 * 2 1 3 12 12 C 1.46897 * 111.00112 * 341.05794 * 11 2 1 13 13 C 1.50708 * 109.47214 * 189.99747 * 12 11 2 14 14 H 1.08002 * 119.99611 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00072 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99664 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99857 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47074 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46810 * 120.00130 * 17 15 13 20 20 H 1.48502 * 109.46869 * 239.99744 * 17 15 13 21 21 H 1.09003 * 109.46882 * 180.54531 * 1 2 3 22 22 H 1.08998 * 109.47077 * 300.54204 * 1 2 3 23 23 H 1.08995 * 109.47262 * 60.54341 * 1 2 3 24 24 H 1.09005 * 108.84176 * 38.08073 * 4 2 1 25 25 H 1.09003 * 108.84567 * 279.72577 * 4 2 1 26 26 H 1.08996 * 109.03776 * 300.93441 * 5 4 2 27 27 H 1.08998 * 108.97608 * 182.02562 * 5 4 2 28 28 H 1.09000 * 109.57431 * 162.93690 * 6 5 4 29 29 H 1.09000 * 109.57257 * 42.56094 * 6 5 4 30 30 H 1.09002 * 109.47153 * 58.34810 * 9 7 6 31 31 H 1.09001 * 109.46832 * 298.35001 * 9 7 6 32 32 H 1.09004 * 109.47261 * 178.34982 * 9 7 6 33 33 H 1.08998 * 108.70958 * 78.70041 * 10 7 6 34 34 H 1.09005 * 108.71077 * 196.70478 * 10 7 6 35 35 H 1.08999 * 109.47242 * 309.99429 * 12 11 2 36 36 H 1.09003 * 109.47533 * 69.99771 * 12 11 2 37 37 H 0.96998 * 119.99683 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0489 -0.7368 -1.2486 5 6 3.4208 -0.3733 -1.5861 6 6 4.4040 -0.7407 -0.4521 7 6 4.2838 0.2816 0.6463 8 1 3.9798 1.2327 0.2091 9 6 5.6525 0.4588 1.3067 10 6 3.2608 -0.1175 1.7250 11 7 2.0163 -0.6913 1.1696 12 6 0.9725 -0.7826 2.1991 13 6 1.5777 -1.2839 3.4851 14 1 2.6323 -1.5122 3.5326 15 6 0.7852 -1.4511 4.6008 16 7 -0.4989 -1.1726 4.5430 17 14 1.5356 -2.0717 6.1949 18 1 2.9882 -2.3093 5.9987 19 1 1.3390 -1.0580 7.2621 20 1 0.8758 -3.3418 6.5910 21 1 -0.3633 -1.0277 0.0098 22 1 -0.3633 0.5222 0.8851 23 1 -0.3633 0.5053 -0.8948 24 1 1.4030 -0.4963 -2.0931 25 1 2.0035 -1.8108 -1.0679 26 1 3.4701 0.7007 -1.7655 27 1 3.7135 -0.8992 -2.4948 28 1 5.4231 -0.7430 -0.8388 29 1 4.1577 -1.7278 -0.0608 30 1 6.3800 0.7703 0.5571 31 1 5.9679 -0.4866 1.7483 32 1 5.5848 1.2188 2.0851 33 1 3.7200 -0.8506 2.3881 34 1 3.0055 0.7668 2.3090 35 1 0.5363 0.2028 2.3628 36 1 0.1963 -1.4733 1.8694 37 1 -1.0565 -1.2905 5.3279 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306975318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:52 Heat of formation + Delta-G solvation = -28.629612 kcal Electronic energy + Delta-G solvation = -15088.326991 eV Core-core repulsion = 12864.198504 eV Total energy + Delta-G solvation = -2224.128488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50563 -36.47846 -35.13550 -34.11508 -30.68998 -29.03856 -27.25276 -26.20932 -24.43489 -22.52636 -21.25235 -19.78330 -18.37614 -16.85991 -16.79662 -16.01471 -15.89544 -15.39175 -14.60832 -14.53832 -14.00647 -13.61106 -13.47684 -13.24960 -13.19245 -13.01985 -12.75185 -12.70704 -12.45962 -12.17936 -11.88799 -11.65428 -11.39670 -11.19222 -11.18376 -11.00587 -10.91077 -10.62947 -8.70760 -8.21618 -6.30520 1.37731 1.38455 1.51608 2.38862 3.11437 3.29965 3.82700 3.97507 4.05238 4.21765 4.24742 4.43700 4.51826 4.69434 4.72780 4.78168 4.87347 4.93518 4.98486 5.02283 5.04148 5.19062 5.23631 5.27434 5.34690 5.36344 5.44935 5.49033 5.57092 5.63373 5.69158 5.71307 6.06685 6.40989 6.87268 6.95346 7.39664 8.90364 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.032026 B = 0.010187 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.088716 B = 2747.871961 C = 3415.913137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.086 3.914 3 H 0.036 0.964 4 C -0.101 4.101 5 C -0.109 4.109 6 C -0.103 4.103 7 C -0.089 4.089 8 H 0.061 0.939 9 C -0.140 4.140 10 C 0.087 3.913 11 N -0.549 5.549 12 C 0.215 3.785 13 C -0.535 4.535 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.054 0.946 34 H -0.002 1.002 35 H -0.038 1.038 36 H 0.007 0.993 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.147 2.849 -10.444 14.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 H 0.054 0.946 4 C -0.139 4.139 5 C -0.146 4.146 6 C -0.140 4.140 7 C -0.108 4.108 8 H 0.080 0.920 9 C -0.197 4.197 10 C -0.041 4.041 11 N -0.274 5.274 12 C 0.089 3.911 13 C -0.573 4.573 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.203 1.203 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.016 0.984 35 H -0.020 1.020 36 H 0.025 0.975 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.100 2.409 -10.498 14.100 hybrid contribution -0.601 0.505 1.578 1.762 sum 8.499 2.914 -8.920 12.661 Atomic orbital electron populations 1.22058 0.95771 1.01568 1.01276 1.21389 0.93921 0.95167 0.91797 0.94637 1.20488 0.97439 1.00323 0.95693 1.20533 0.94426 1.01357 0.98332 1.21361 0.99453 0.98485 0.94749 1.21019 0.94972 0.99127 0.95678 0.92039 1.21851 0.95524 1.01566 1.00795 1.22227 0.90131 0.95892 0.95837 1.60831 1.05343 1.54077 1.07179 1.19397 0.89952 0.92884 0.88900 1.21815 0.95872 1.43614 0.95998 0.91549 1.25912 0.95219 0.95761 1.02742 1.70102 1.06151 1.50095 1.30933 0.85395 0.78909 0.77948 0.78762 1.18711 1.20474 1.20348 0.93338 0.94733 0.90273 0.90999 0.93003 0.92020 0.90547 0.90265 0.93024 0.90388 0.92876 0.93390 0.92735 0.98373 1.01996 0.97482 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 7.89 71.98 0.57 -5.04 16 2 C 0.09 3.20 2.53 45.73 0.12 3.31 16 3 H 0.04 1.30 6.79 -2.39 -0.02 1.28 16 4 C -0.10 -3.00 4.81 28.74 0.14 -2.86 16 5 C -0.11 -2.69 5.34 28.93 0.15 -2.53 16 6 C -0.10 -2.77 5.13 30.31 0.16 -2.62 16 7 C -0.09 -2.69 2.19 -11.28 -0.02 -2.72 16 8 H 0.06 1.81 6.65 -2.39 -0.02 1.79 16 9 C -0.14 -3.53 8.82 71.98 0.63 -2.89 16 10 C 0.09 3.57 3.87 86.43 0.33 3.90 16 11 N -0.55 -24.56 4.16 -875.36 -3.64 -28.20 16 12 C 0.21 11.78 3.73 85.56 0.32 12.10 16 13 C -0.53 -31.06 8.49 25.60 0.22 -30.84 16 14 H 0.07 3.76 5.69 -2.91 -0.02 3.75 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 17 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 18 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 21 H 0.05 1.92 7.34 -2.39 -0.02 1.91 16 22 H 0.03 1.48 6.20 -2.39 -0.01 1.47 16 23 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 24 H 0.07 1.81 7.94 -2.38 -0.02 1.79 16 25 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 26 H 0.06 1.41 7.59 -2.39 -0.02 1.39 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.72 7.67 -2.39 -0.02 1.70 16 29 H 0.05 1.65 7.78 -2.39 -0.02 1.63 16 30 H 0.08 1.55 8.03 -2.39 -0.02 1.53 16 31 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.05 2.43 6.08 -2.39 -0.01 2.41 16 34 H 0.00 -0.10 8.01 -2.38 -0.02 -0.12 16 35 H -0.04 -2.24 6.63 -2.39 -0.02 -2.26 16 36 H 0.01 0.43 6.91 -2.39 -0.02 0.41 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -64.23 274.82 2.76 -61.47 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.01 Total: 6.09 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 3.08 Total: -29.63 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -3.35 Total: -85.14 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.23 2.76 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306975318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.837 kcal (2) G-P(sol) polarization free energy of solvation -64.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds