Wall clock time and date at job start Sun Mar 29 2020 21:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48509 * 109.46870 * 269.99960 * 3 2 1 5 5 H 1.48500 * 109.47106 * 29.99449 * 3 2 1 6 6 H 1.48495 * 109.47683 * 150.00083 * 3 2 1 7 7 C 1.37875 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99937 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.38997 * 119.99831 * 179.97438 * 10 9 7 12 12 C 1.39113 * 119.69679 * 0.02562 * 11 10 9 13 13 C 1.38341 * 119.12596 * 179.97438 * 12 11 10 14 14 C 1.38816 * 118.51920 * 0.27764 * 13 12 11 15 15 C 1.38195 * 119.31864 * 359.46668 * 14 13 12 16 16 Cl 1.73603 * 119.59054 * 180.25860 * 15 14 13 17 17 N 1.32055 * 120.82383 * 0.54332 * 15 14 13 18 18 H 0.97006 * 120.00052 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47118 * 60.00173 * 9 7 2 20 20 H 1.09001 * 109.46997 * 299.99793 * 9 7 2 21 21 H 0.96996 * 120.00101 * 0.02562 * 10 9 7 22 22 H 1.07995 * 120.43461 * 0.02562 * 12 11 10 23 23 H 1.08002 * 120.73563 * 179.97438 * 13 12 11 24 24 H 1.08007 * 120.33803 * 179.70273 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7397 -4.9231 0.0011 12 6 0.3706 -5.1701 0.0011 13 6 -0.0775 -6.4789 0.0011 14 6 0.8618 -7.5011 0.0070 15 6 2.2069 -7.1841 0.0014 16 17 3.3875 -8.4568 0.0020 17 7 2.6054 -5.9251 0.0014 18 1 -0.4850 0.8401 -0.0004 19 1 0.6247 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 3.1566 -3.4354 0.0009 22 1 -0.3330 -4.3509 0.0002 23 1 -1.1345 -6.7004 0.0015 24 1 0.5445 -8.5335 0.0120 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307104345.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:04 Heat of formation + Delta-G solvation = 22.076143 kcal Electronic energy + Delta-G solvation = -11232.447964 eV Core-core repulsion = 8978.302213 eV Total energy + Delta-G solvation = -2254.145751 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 212.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.75286 -36.50719 -35.20031 -32.77625 -32.01508 -29.37752 -26.75792 -23.62890 -22.73754 -21.34567 -17.69689 -16.76684 -15.95948 -15.36266 -14.76479 -14.37125 -14.25920 -13.40438 -12.85695 -12.79645 -12.16700 -11.60755 -11.45855 -11.09904 -10.99795 -10.96125 -10.30367 -9.85565 -9.55313 -9.19090 -9.18719 -8.62740 -7.04190 -6.30196 -4.35970 1.49133 1.78548 2.06825 3.19295 3.25834 3.28943 3.98682 4.19764 4.30297 5.05063 5.07758 5.40229 5.54270 5.65209 5.82151 6.27239 6.58034 6.75129 7.01320 7.23862 7.49020 7.66488 7.80767 8.40846 8.50509 8.79815 9.31081 10.80280 Molecular weight = 212.04amu Principal moments of inertia in cm(-1) A = 0.066348 B = 0.006168 C = 0.005660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.916954 B = 4538.834243 C = 4945.605894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.065 0.935 9 C 0.252 3.748 10 N -0.697 5.697 11 C 0.428 3.572 12 C -0.237 4.237 13 C -0.024 4.024 14 C -0.242 4.242 15 C 0.229 3.771 16 Cl -0.055 7.055 17 N -0.559 5.559 18 H 0.267 0.733 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.399 0.601 22 H 0.142 0.858 23 H 0.136 0.864 24 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -11.559 0.005 11.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.322 5.322 11 C 0.188 3.812 12 C -0.263 4.263 13 C -0.050 4.050 14 C -0.268 4.268 15 C 0.063 3.937 16 Cl -0.027 7.027 17 N -0.280 5.280 18 H 0.077 0.923 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.234 0.766 22 H 0.160 0.840 23 H 0.154 0.846 24 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.079 -11.097 0.010 11.149 hybrid contribution 0.056 0.704 -0.009 0.706 sum 1.135 -10.392 0.000 10.454 Atomic orbital electron populations 1.69931 1.06100 1.27587 1.48975 1.24920 0.94980 0.99546 0.94419 0.86354 0.79681 0.82243 0.78349 1.20353 1.20904 1.19650 1.21161 0.93567 0.90054 1.53246 0.91667 1.19282 0.88408 0.82042 0.97125 1.45527 1.10900 1.01173 1.74647 1.18358 0.88401 0.85705 0.88705 1.21609 0.95140 0.98276 1.11290 1.21205 0.99439 0.91527 0.92812 1.21244 0.91067 1.00662 1.13792 1.21064 0.87509 0.87875 0.97238 1.98363 1.60274 1.47442 1.96598 1.66314 1.39464 0.98520 1.23749 0.92310 0.95538 0.95523 0.76608 0.84005 0.84582 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 13.29 55.43 0.74 -23.93 14 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 14 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.41 14 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 14 6 H -0.27 -6.05 7.11 56.52 0.40 -5.64 14 7 C -0.54 -14.28 9.28 -34.44 -0.32 -14.60 14 8 H 0.07 1.67 7.60 -52.49 -0.40 1.27 14 9 C 0.25 6.14 4.64 -5.19 -0.02 6.11 14 10 N -0.70 -14.95 5.72 -61.60 -0.35 -15.31 14 11 C 0.43 8.55 7.65 -155.02 -1.19 7.36 14 12 C -0.24 -4.23 9.33 -39.22 -0.37 -4.59 14 13 C -0.02 -0.35 10.16 -39.33 -0.40 -0.75 14 14 C -0.24 -3.51 9.87 -39.38 -0.39 -3.90 14 15 C 0.23 3.84 7.27 -17.47 -0.13 3.72 14 16 Cl -0.06 -0.79 29.10 -51.86 -1.51 -2.30 14 17 N -0.56 -10.82 10.37 -9.55 -0.10 -10.92 14 18 H 0.27 6.99 8.31 -40.82 -0.34 6.65 14 19 H 0.03 0.68 7.93 -51.93 -0.41 0.27 14 20 H 0.03 0.69 7.93 -51.93 -0.41 0.27 14 21 H 0.40 8.33 8.44 -40.82 -0.34 7.99 14 22 H 0.14 2.56 6.70 -52.49 -0.35 2.21 14 23 H 0.14 1.50 8.06 -52.49 -0.42 1.07 14 24 H 0.13 1.53 8.06 -52.48 -0.42 1.10 14 LS Contribution 236.02 15.07 3.56 3.56 Total: -1.00 -27.53 236.02 -7.50 -35.03 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -1.90 Total: 3.48 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.91 Total: -5.02 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.28 Total: -50.16 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.51 Total: -2.30 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -27.53 -7.50 -35.03 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307104345.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.104 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds