Wall clock time and date at job start Sun Mar 29 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46830 * 2 1 4 4 C 1.53004 * 109.47037 * 119.99471 * 2 1 3 5 5 C 1.52999 * 109.46648 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47596 * 300.00208 * 5 4 2 7 7 C 1.53003 * 109.47018 * 60.00452 * 6 5 4 8 8 H 1.09000 * 109.47233 * 59.99427 * 7 6 5 9 9 C 1.52993 * 109.47188 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47043 * 294.99701 * 9 7 6 11 11 C 1.46501 * 120.00338 * 90.00124 * 10 9 7 12 12 C 1.36940 * 119.99971 * 270.00565 * 10 9 7 13 13 H 1.08004 * 120.00297 * 21.51700 * 12 10 9 14 14 C 1.38816 * 119.99828 * 201.52734 * 12 10 9 15 15 N 1.31619 * 120.00151 * 13.23723 * 14 12 10 16 16 Si 1.86800 * 119.99669 * 193.24332 * 14 12 10 17 17 H 1.48506 * 109.47118 * 89.99663 * 16 14 12 18 18 H 1.48500 * 109.47211 * 209.99412 * 16 14 12 19 19 H 1.48498 * 109.47460 * 329.99793 * 16 14 12 20 20 C 1.52998 * 109.47108 * 239.99619 * 2 1 3 21 21 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46778 * 300.00374 * 1 2 3 23 23 H 1.08992 * 109.47429 * 60.00174 * 1 2 3 24 24 H 1.09000 * 109.46879 * 60.00559 * 4 2 1 25 25 H 1.09000 * 109.47529 * 300.00109 * 4 2 1 26 26 H 1.09002 * 109.46901 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47239 * 60.00719 * 5 4 2 28 28 H 1.08997 * 109.46923 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.46994 * 300.00383 * 6 5 4 30 30 H 1.08994 * 109.47449 * 54.99466 * 9 7 6 31 31 H 1.08997 * 109.47456 * 174.99653 * 9 7 6 32 32 H 1.08995 * 109.47131 * 95.24329 * 11 10 9 33 33 H 1.09007 * 109.47347 * 215.24923 * 11 10 9 34 34 H 1.09003 * 109.46842 * 335.23950 * 11 10 9 35 35 H 0.96995 * 119.99699 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.46846 * 59.99971 * 20 2 1 37 37 H 1.08994 * 109.46994 * 300.00205 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4433 -0.0002 7 6 3.5696 -0.7221 -1.2495 8 1 3.9332 0.3055 -1.2497 9 6 4.0785 -1.4440 -2.4987 10 7 5.5386 -1.3416 -2.5610 11 6 6.3726 -2.3664 -1.9281 12 6 6.1240 -0.2880 -3.2109 13 1 5.5681 0.6241 -3.3709 14 6 7.4319 -0.3921 -3.6642 15 7 8.0214 -1.5681 -3.7085 16 14 8.3553 1.1367 -4.2112 17 1 9.0676 1.7270 -3.0495 18 1 9.3394 0.7714 -5.2616 19 1 7.3932 2.1273 -4.7573 20 6 2.0400 -0.7213 -1.2492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.6767 -1.7488 1.2493 25 1 1.6767 -0.2073 2.1393 26 1 3.9334 -1.2358 2.1387 27 1 3.9337 0.3059 1.2487 28 1 5.1695 -1.4440 -0.0002 29 1 3.7159 -2.4708 0.0000 30 1 3.7896 -2.4940 -2.4546 31 1 3.6439 -0.9846 -3.3864 32 1 6.6571 -3.1125 -2.6699 33 1 7.2692 -1.9024 -1.5169 34 1 5.8119 -2.8468 -1.1261 35 1 8.9354 -1.6408 -4.0249 36 1 1.6766 -0.2075 -2.1392 37 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307115339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:36 Heat of formation + Delta-G solvation = -12.804354 kcal Electronic energy + Delta-G solvation = -14774.799426 eV Core-core repulsion = 12551.357173 eV Total energy + Delta-G solvation = -2223.442253 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.66893 -35.44542 -32.50048 -31.42827 -29.98106 -26.31109 -25.85332 -25.18499 -21.88211 -21.19265 -19.65742 -19.29629 -16.50088 -15.01506 -14.85231 -14.24097 -14.08348 -13.60165 -13.56048 -12.95804 -12.67642 -12.30407 -12.14249 -11.61442 -11.40383 -11.15137 -10.90716 -10.77842 -10.67425 -10.61029 -10.47466 -10.27423 -9.99532 -9.80152 -9.76251 -9.53309 -9.40461 -8.43808 -6.62245 -5.62592 -3.07358 3.42972 3.49087 3.50448 4.57277 4.93567 4.99308 5.09763 5.44199 5.49088 5.53291 5.69118 5.75635 5.77959 5.87214 5.89132 6.02225 6.04504 6.09757 6.15777 6.25844 6.40749 6.44011 6.55479 6.59015 6.70088 6.74181 6.85551 6.93280 7.06724 7.18189 7.48680 7.82449 7.89592 8.49548 9.34288 9.99167 10.48047 11.41928 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044482 B = 0.007620 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.312085 B = 3673.513581 C = 3838.783699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.107 4.107 7 C -0.107 4.107 8 H 0.066 0.934 9 C 0.157 3.843 10 N -0.602 5.602 11 C 0.162 3.838 12 C -0.248 4.248 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.911 5.911 16 Si 0.902 3.098 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 C -0.106 4.106 21 H 0.051 0.949 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.002 0.998 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.507 0.993 8.159 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.128 4.128 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.325 5.325 11 C 0.017 3.983 12 C -0.378 4.378 13 H 0.085 0.915 14 C -0.200 4.200 15 N -0.557 5.557 16 Si 0.733 3.267 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.206 1.206 20 C -0.144 4.144 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.320 0.930 8.085 13.942 hybrid contribution 0.631 0.828 -0.293 1.082 sum -10.689 1.759 7.791 13.344 Atomic orbital electron populations 1.21835 0.95996 1.01382 1.01076 1.21136 0.94575 0.99744 0.95630 0.91575 1.21563 0.96122 1.00117 0.96937 1.21560 0.95018 1.00814 0.98308 1.21570 1.01522 0.97958 0.93434 1.21819 0.92935 1.00897 0.97171 0.91546 1.20762 0.85344 0.96594 0.94378 1.43874 0.99310 1.26991 1.62320 1.20846 0.92768 0.91365 0.93275 1.19213 0.96467 0.92148 1.29946 0.91528 1.24976 0.98728 0.96362 0.99918 1.70085 1.13132 1.21205 1.51235 0.86282 0.79778 0.82745 0.77930 1.21651 1.21848 1.20586 1.21592 0.96569 0.99760 0.96478 0.92978 0.93280 0.92933 0.92447 0.92972 0.92907 0.92398 0.90870 0.93259 0.94952 0.93864 0.95592 0.94250 0.97963 0.93928 0.92551 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.19 2.72 -90.62 -0.25 -1.43 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 5 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 6 C -0.11 -1.82 4.19 -26.73 -0.11 -1.93 16 7 C -0.11 -1.92 2.40 -90.64 -0.22 -2.13 16 8 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 9 C 0.16 3.32 5.13 -4.04 -0.02 3.30 16 10 N -0.60 -15.50 2.75 -181.12 -0.50 -15.99 16 11 C 0.16 4.10 7.88 59.85 0.47 4.57 16 12 C -0.25 -6.99 9.67 -15.06 -0.15 -7.14 16 13 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16 14 C 0.00 -0.07 5.10 -17.43 -0.09 -0.15 16 15 N -0.91 -27.30 10.63 55.49 0.59 -26.71 16 16 Si 0.90 22.41 29.57 -169.99 -5.03 17.38 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.11 -1.55 4.48 -26.75 -0.12 -1.67 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.43 5.99 -51.93 -0.31 1.12 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.04 0.93 8.04 -51.93 -0.42 0.51 16 32 H 0.03 0.71 7.37 -51.93 -0.38 0.33 16 33 H 0.04 1.07 7.25 -51.93 -0.38 0.69 16 34 H 0.00 0.04 6.22 -51.93 -0.32 -0.28 16 35 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 282.99 15.07 4.26 4.26 Total: -1.00 -29.44 282.99 -7.96 -37.39 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -6.85 Total: -5.13 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.44 Total: -11.21 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.09 Total: -42.70 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.44 -7.96 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307115339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.589 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds