Wall clock time and date at job start Sun Mar 29 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46830 * 2 1 4 4 C 1.53004 * 109.47037 * 119.99471 * 2 1 3 5 5 C 1.52999 * 109.46648 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47596 * 300.00208 * 5 4 2 7 7 C 1.53003 * 109.47018 * 60.00452 * 6 5 4 8 8 H 1.09000 * 109.47233 * 59.99427 * 7 6 5 9 9 C 1.52993 * 109.47188 * 180.02562 * 7 6 5 10 10 N 1.46501 * 109.47043 * 294.99701 * 9 7 6 11 11 C 1.46501 * 120.00338 * 90.00124 * 10 9 7 12 12 C 1.36940 * 119.99971 * 270.00565 * 10 9 7 13 13 H 1.08004 * 120.00297 * 21.51700 * 12 10 9 14 14 C 1.38816 * 119.99828 * 201.52734 * 12 10 9 15 15 N 1.31619 * 120.00151 * 13.23723 * 14 12 10 16 16 Si 1.86800 * 119.99669 * 193.24332 * 14 12 10 17 17 H 1.48506 * 109.47118 * 89.99663 * 16 14 12 18 18 H 1.48500 * 109.47211 * 209.99412 * 16 14 12 19 19 H 1.48498 * 109.47460 * 329.99793 * 16 14 12 20 20 C 1.52998 * 109.47108 * 239.99619 * 2 1 3 21 21 H 1.08998 * 109.47227 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46778 * 300.00374 * 1 2 3 23 23 H 1.08992 * 109.47429 * 60.00174 * 1 2 3 24 24 H 1.09000 * 109.46879 * 60.00559 * 4 2 1 25 25 H 1.09000 * 109.47529 * 300.00109 * 4 2 1 26 26 H 1.09002 * 109.46901 * 180.02562 * 5 4 2 27 27 H 1.09002 * 109.47239 * 60.00719 * 5 4 2 28 28 H 1.08997 * 109.46923 * 180.02562 * 6 5 4 29 29 H 1.08994 * 109.46994 * 300.00383 * 6 5 4 30 30 H 1.08994 * 109.47449 * 54.99466 * 9 7 6 31 31 H 1.08997 * 109.47456 * 174.99653 * 9 7 6 32 32 H 1.08995 * 109.47131 * 95.24329 * 11 10 9 33 33 H 1.09007 * 109.47347 * 215.24923 * 11 10 9 34 34 H 1.09003 * 109.46842 * 335.23950 * 11 10 9 35 35 H 0.96995 * 119.99699 * 180.02562 * 15 14 12 36 36 H 1.09002 * 109.46846 * 59.99971 * 20 2 1 37 37 H 1.08994 * 109.46994 * 300.00205 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4433 -0.0002 7 6 3.5696 -0.7221 -1.2495 8 1 3.9332 0.3055 -1.2497 9 6 4.0785 -1.4440 -2.4987 10 7 5.5386 -1.3416 -2.5610 11 6 6.3726 -2.3664 -1.9281 12 6 6.1240 -0.2880 -3.2109 13 1 5.5681 0.6241 -3.3709 14 6 7.4319 -0.3921 -3.6642 15 7 8.0214 -1.5681 -3.7085 16 14 8.3553 1.1367 -4.2112 17 1 9.0676 1.7270 -3.0495 18 1 9.3394 0.7714 -5.2616 19 1 7.3932 2.1273 -4.7573 20 6 2.0400 -0.7213 -1.2492 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.6767 -1.7488 1.2493 25 1 1.6767 -0.2073 2.1393 26 1 3.9334 -1.2358 2.1387 27 1 3.9337 0.3059 1.2487 28 1 5.1695 -1.4440 -0.0002 29 1 3.7159 -2.4708 0.0000 30 1 3.7896 -2.4940 -2.4546 31 1 3.6439 -0.9846 -3.3864 32 1 6.6571 -3.1125 -2.6699 33 1 7.2692 -1.9024 -1.5169 34 1 5.8119 -2.8468 -1.1261 35 1 8.9354 -1.6408 -4.0249 36 1 1.6766 -0.2075 -2.1392 37 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307115339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:35 Heat of formation + Delta-G solvation = -28.200441 kcal Electronic energy + Delta-G solvation = -14775.467050 eV Core-core repulsion = 12551.357173 eV Total energy + Delta-G solvation = -2224.109878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.96089 -37.26862 -34.11053 -32.79869 -31.70685 -28.13744 -27.14213 -26.94106 -23.45441 -22.62311 -21.13412 -20.51827 -18.62002 -16.91620 -16.16660 -15.68935 -15.53938 -15.24090 -14.88696 -14.47899 -14.13437 -14.02921 -13.19660 -13.07544 -12.92509 -12.80809 -12.51527 -12.46718 -12.32211 -12.07807 -11.98601 -11.81607 -11.74223 -11.47687 -11.21529 -10.98928 -10.71169 -10.54564 -8.72564 -7.80498 -5.28060 1.44538 1.46013 1.54837 2.51266 3.30775 3.69096 3.86571 3.95649 4.03727 4.27553 4.41651 4.58873 4.63275 4.65068 4.72850 4.82848 4.88086 4.88994 4.92072 5.07802 5.09303 5.12776 5.19588 5.27100 5.33683 5.39915 5.47638 5.51971 5.55926 5.62815 5.67493 5.73293 5.76050 6.34399 7.17336 7.91532 8.34737 9.22109 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044482 B = 0.007620 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.312085 B = 3673.513581 C = 3838.783699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.057 0.943 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.096 4.096 8 H 0.041 0.959 9 C 0.153 3.847 10 N -0.618 5.618 11 C 0.180 3.820 12 C -0.257 4.257 13 H 0.067 0.933 14 C -0.058 4.058 15 N -0.942 5.942 16 Si 0.967 3.033 17 H -0.287 1.287 18 H -0.294 1.294 19 H -0.269 1.269 20 C -0.100 4.100 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.036 0.964 32 H -0.002 1.002 33 H 0.011 0.989 34 H 0.035 0.965 35 H 0.247 0.753 36 H 0.056 0.944 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.313 1.564 9.197 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.142 4.142 7 C -0.117 4.117 8 H 0.059 0.941 9 C 0.027 3.973 10 N -0.341 5.341 11 C 0.035 3.965 12 C -0.388 4.388 13 H 0.085 0.915 14 C -0.252 4.252 15 N -0.590 5.590 16 Si 0.796 3.204 17 H -0.214 1.214 18 H -0.220 1.220 19 H -0.193 1.193 20 C -0.138 4.138 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.030 0.970 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.169 1.511 9.133 16.097 hybrid contribution 1.150 0.624 -0.613 1.445 sum -12.019 2.135 8.520 14.886 Atomic orbital electron populations 1.21782 0.93960 1.02139 1.01920 1.21119 0.96229 0.98942 0.94695 0.92452 1.21545 0.94327 1.00882 0.97502 1.21521 0.96643 0.99940 0.97244 1.21499 0.99575 0.98762 0.94397 1.21597 0.95412 0.98826 0.95856 0.94076 1.20965 0.82865 0.97664 0.95789 1.44112 1.01217 1.26517 1.62269 1.20561 0.92304 0.90470 0.93133 1.19522 0.96901 0.92904 1.29458 0.91511 1.25760 0.99634 0.99166 1.00668 1.70253 1.13108 1.23107 1.52507 0.85252 0.78390 0.79479 0.77289 1.21417 1.22030 1.19339 1.21534 0.93647 1.00795 0.97805 0.92248 0.91909 0.92732 0.91572 0.91030 0.91566 0.93345 0.93993 0.92377 0.93855 0.94573 0.98401 0.97025 0.94678 0.94384 0.92524 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.19 71.98 0.66 -1.88 16 2 C -0.09 -2.10 2.72 -10.79 -0.03 -2.12 16 3 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 4 C -0.11 -2.29 5.20 30.60 0.16 -2.13 16 5 C -0.12 -3.08 5.92 30.59 0.18 -2.90 16 6 C -0.10 -3.44 4.19 30.59 0.13 -3.31 16 7 C -0.10 -3.37 2.40 -10.81 -0.03 -3.39 16 8 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 9 C 0.15 6.44 5.13 86.38 0.44 6.89 16 10 N -0.62 -32.26 2.75 -726.94 -2.00 -34.26 16 11 C 0.18 9.31 7.88 127.77 1.01 10.32 16 12 C -0.26 -14.72 9.67 84.03 0.81 -13.91 16 13 H 0.07 3.73 7.86 -2.91 -0.02 3.71 16 14 C -0.06 -3.37 5.10 84.86 0.43 -2.93 16 15 N -0.94 -57.82 10.63 21.65 0.23 -57.59 16 16 Si 0.97 46.59 29.57 68.60 2.03 48.62 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 18 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 20 C -0.10 -2.72 4.48 30.58 0.14 -2.58 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.04 1.63 5.99 -2.39 -0.01 1.61 16 29 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 31 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 32 H 0.00 -0.13 7.37 -2.39 -0.02 -0.15 16 33 H 0.01 0.62 7.25 -2.38 -0.02 0.61 16 34 H 0.03 1.54 6.22 -2.39 -0.01 1.53 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -63.42 282.99 5.16 -58.26 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 0.99 Total: 2.93 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 3.91 Total: -17.95 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.77 Total: -91.85 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -63.42 5.16 -58.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307115339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.057 kcal (2) G-P(sol) polarization free energy of solvation -63.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds