Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48503 * 109.46638 * 239.99870 * 3 2 1 5 5 H 1.48494 * 109.47231 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47459 * 120.00141 * 3 2 1 7 7 C 1.40044 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99831 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00554 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99699 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00406 * 180.02562 * 9 7 2 12 12 N 1.40101 * 120.00094 * 180.02562 * 11 9 7 13 13 C 1.34777 * 119.99733 * 180.02562 * 12 11 9 14 14 O 1.21278 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99745 * 179.97438 * 13 12 11 16 16 C 1.53781 * 113.61417 * 179.97438 * 15 13 12 17 17 C 1.53786 * 87.17350 * 139.93966 * 16 15 13 18 18 C 1.53782 * 113.61283 * 277.49692 * 15 13 12 19 19 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99859 * 359.97438 * 11 9 7 21 21 H 0.96993 * 120.00063 * 359.97438 * 12 11 9 22 22 H 1.08996 * 112.85169 * 48.79875 * 15 13 12 23 23 H 1.09002 * 113.61445 * 254.52965 * 16 15 13 24 24 H 1.09002 * 113.61408 * 25.34696 * 16 15 13 25 25 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 26 26 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 27 27 H 1.08997 * 113.61668 * 334.56418 * 18 15 13 28 28 H 1.08998 * 113.61674 * 105.38927 * 18 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0016 12 7 1.2484 -4.8610 0.0010 13 6 1.9224 -6.0282 0.0026 14 8 3.1351 -6.0281 0.0040 15 6 1.1689 -7.3333 0.0026 16 6 2.0811 -8.5713 0.0039 17 6 1.0890 -9.2072 0.9919 18 6 0.7000 -7.7739 1.3994 19 1 -0.4850 0.8400 -0.0004 20 1 2.9190 -3.6477 0.0020 21 1 0.2785 -4.8610 0.0003 22 1 0.3851 -7.3696 -0.7540 23 1 2.1264 -9.0813 -0.9584 24 1 3.0664 -8.3872 0.4321 25 1 0.2823 -9.7572 0.5075 26 1 1.5696 -9.7738 1.7895 27 1 1.3071 -7.3721 2.2106 28 1 -0.3690 -7.6391 1.5639 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307140543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = -58.360028 kcal Electronic energy + Delta-G solvation = -13673.355820 eV Core-core repulsion = 11110.846025 eV Total energy + Delta-G solvation = -2562.509795 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 212.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32499 -39.51903 -38.17570 -35.91254 -34.64323 -32.13016 -28.61548 -27.10214 -26.50364 -22.69345 -22.29959 -20.45554 -19.44891 -18.37902 -18.08846 -17.21994 -16.53075 -15.99659 -15.75417 -15.56281 -14.71203 -14.57432 -13.83745 -13.39562 -13.32989 -13.01031 -12.80427 -12.75501 -12.16862 -12.08177 -11.92410 -11.42653 -11.29725 -10.96308 -10.92470 -10.12717 -9.00709 -8.40963 -6.97351 1.29287 1.41370 1.45421 1.54438 1.58702 2.26582 2.37319 3.38945 3.48530 3.58431 3.67871 3.91269 3.97482 4.24364 4.68880 4.80483 4.87867 5.04180 5.11579 5.18002 5.24194 5.47350 5.53937 5.95996 6.16228 6.37196 6.74834 7.24649 7.25519 8.30717 8.53914 Molecular weight = 212.09amu Principal moments of inertia in cm(-1) A = 0.080800 B = 0.006065 C = 0.005770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 346.453462 B = 4615.513646 C = 4851.717518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.033 3.967 3 Si 1.005 2.995 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.563 4.563 8 H 0.091 0.909 9 C 0.541 3.459 10 O -0.621 6.621 11 N -0.564 5.564 12 N -0.514 5.514 13 C 0.507 3.493 14 O -0.594 6.594 15 C -0.130 4.130 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.127 4.127 19 H 0.280 0.720 20 H 0.416 0.584 21 H 0.426 0.574 22 H 0.139 0.861 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.454 -12.284 0.953 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.184 4.184 3 Si 0.824 3.176 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.601 4.601 8 H 0.109 0.891 9 C 0.347 3.653 10 O -0.507 6.507 11 N -0.315 5.315 12 N -0.257 5.257 13 C 0.295 3.705 14 O -0.475 6.475 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.165 4.165 19 H 0.090 0.910 20 H 0.256 0.744 21 H 0.267 0.733 22 H 0.156 0.844 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.126 0.874 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.231 -12.191 0.953 12.290 hybrid contribution 0.267 0.907 -0.056 0.947 sum 1.499 -11.284 0.897 11.419 Atomic orbital electron populations 1.70132 1.09402 1.29626 1.34967 1.26969 0.95674 1.04745 0.90971 0.84956 0.78155 0.74176 0.80360 1.17849 1.19445 1.17840 1.21220 0.95004 0.88787 1.55050 0.89094 1.18881 0.87319 0.82286 0.76837 1.90559 1.15268 1.86881 1.57957 1.45448 1.07803 0.95878 1.82384 1.45072 1.09284 0.97778 1.73548 1.21635 0.88307 0.84706 0.75870 1.90619 1.15491 1.87774 1.53599 1.22986 1.00798 0.88852 1.02620 1.22824 0.97891 0.93395 1.01527 1.22837 0.99135 0.95010 0.98951 1.22934 1.02547 0.97512 0.93482 0.90996 0.74395 0.73308 0.84351 0.89537 0.90912 0.87427 0.90001 0.91281 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.97 11.83 21.83 0.26 -47.71 15 2 C 0.03 1.79 5.50 85.30 0.47 2.26 15 3 Si 1.01 39.86 29.56 68.60 2.03 41.89 15 4 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 6 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 7 C -0.56 -31.66 9.54 24.83 0.24 -31.42 15 8 H 0.09 4.62 7.85 -2.91 -0.02 4.60 15 9 C 0.54 31.34 7.86 86.36 0.68 32.01 15 10 O -0.62 -39.94 14.86 -4.31 -0.06 -40.00 15 11 N -0.56 -27.64 6.25 -176.63 -1.10 -28.74 15 12 N -0.51 -21.27 6.26 -173.53 -1.09 -22.36 15 13 C 0.51 18.38 7.47 87.66 0.65 19.03 15 14 O -0.59 -25.40 15.74 -3.02 -0.05 -25.45 15 15 C -0.13 -3.17 4.15 -11.01 -0.05 -3.22 15 16 C -0.12 -2.51 7.40 31.12 0.23 -2.28 15 17 C -0.12 -1.90 8.10 31.20 0.25 -1.65 15 18 C -0.13 -2.60 7.64 31.20 0.24 -2.36 15 19 H 0.28 14.87 8.29 -92.71 -0.77 14.10 15 20 H 0.42 19.48 7.98 -213.32 -1.70 17.77 15 21 H 0.43 16.93 8.00 -213.33 -1.71 15.23 15 22 H 0.14 2.69 8.14 -2.39 -0.02 2.67 15 23 H 0.09 1.55 8.14 -2.39 -0.02 1.53 15 24 H 0.07 1.89 7.43 -2.39 -0.02 1.87 15 25 H 0.11 1.20 8.14 -2.39 -0.02 1.18 15 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.07 1.65 8.09 -2.39 -0.02 1.63 15 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 Total: -1.00 -74.36 251.83 0.49 -73.88 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -2.21 Total: 36.11 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 2.72 Total: 12.38 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -1.93 Total: -98.81 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -0.11 Total: -65.45 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Total: -74.36 0.49 -73.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307140543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.518 kcal (2) G-P(sol) polarization free energy of solvation -74.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds