Wall clock time and date at job start Sun Mar 29 2020 21:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46991 * 60.00689 * 5 4 2 8 8 C 1.52997 * 109.47232 * 300.00126 * 5 4 2 9 9 C 1.52996 * 109.46975 * 60.00237 * 8 5 4 10 10 C 1.53000 * 109.47060 * 240.00128 * 2 1 3 11 11 H 1.08992 * 109.46645 * 299.99769 * 10 2 1 12 12 N 1.46496 * 109.47096 * 60.00079 * 10 2 1 13 13 C 1.36936 * 119.99518 * 204.99923 * 12 10 2 14 14 H 1.08001 * 120.00767 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99824 * 180.02562 * 13 12 10 16 16 N 1.31616 * 119.99954 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00205 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47151 * 59.99638 * 17 15 13 19 19 H 1.48496 * 109.47543 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46910 * 299.99797 * 17 15 13 21 21 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47502 * 300.00478 * 1 2 3 23 23 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 24 24 H 1.09001 * 109.46993 * 59.99869 * 4 2 1 25 25 H 1.09004 * 109.47298 * 300.00283 * 4 2 1 26 26 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 27 27 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 28 28 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.46719 * 299.99711 * 7 5 4 31 31 H 1.08993 * 109.47839 * 59.99553 * 7 5 4 32 32 H 1.09000 * 109.47140 * 179.97438 * 8 5 4 33 33 H 1.09001 * 109.47375 * 299.99867 * 8 5 4 34 34 H 1.09001 * 109.47372 * 59.99628 * 9 8 5 35 35 H 1.08996 * 109.47261 * 180.02562 * 9 8 5 36 36 H 0.96992 * 120.00382 * 24.99943 * 12 10 2 37 37 H 0.97001 * 119.99945 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7217 1.2489 6 6 4.0800 -1.4435 2.4979 7 6 4.0804 0.7206 1.2487 8 6 4.0794 -1.4434 -0.0003 9 6 3.5695 -0.7221 -1.2495 10 6 2.0400 -0.7212 -1.2493 11 1 1.6766 -1.7488 -1.2492 12 7 1.5516 -0.0306 -2.4454 13 6 1.4209 -0.7138 -3.6249 14 1 1.6781 -1.7616 -3.6736 15 6 0.9587 -0.0593 -4.7585 16 7 0.6457 1.2177 -4.6994 17 14 0.7796 -0.9913 -6.3674 18 1 -0.1764 -2.1131 -6.1859 19 1 0.2708 -0.0729 -7.4176 20 1 2.1016 -1.5291 -6.7777 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -1.7488 1.2493 25 1 1.6766 -0.2073 2.1393 26 1 3.7169 -0.9297 3.3881 27 1 3.7162 -2.4710 2.4978 28 1 5.1700 -1.4435 2.4979 29 1 5.1704 0.7202 1.2489 30 1 3.7171 1.2344 0.3587 31 1 3.7175 1.2347 2.1386 32 1 5.1694 -1.4434 -0.0007 33 1 3.7158 -2.4709 0.0000 34 1 3.9331 0.3054 -1.2497 35 1 3.9320 -1.2365 -2.1394 36 1 1.3210 0.9105 -2.4018 37 1 0.3223 1.6750 -5.4914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307188699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:02 Heat of formation + Delta-G solvation = -23.991132 kcal Electronic energy + Delta-G solvation = -14969.775852 eV Core-core repulsion = 12745.848503 eV Total energy + Delta-G solvation = -2223.927348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.33562 -34.93879 -32.61074 -31.31972 -29.37745 -27.14596 -26.15380 -25.21568 -22.94612 -21.15875 -19.68390 -18.20240 -16.86158 -15.10014 -14.62054 -14.45842 -13.78783 -13.69834 -13.48126 -12.97890 -12.31907 -12.11840 -12.02698 -11.89504 -11.49494 -11.37174 -11.31561 -10.92018 -10.85155 -10.63245 -10.44763 -10.29969 -10.11284 -9.92285 -9.74983 -9.41903 -9.27766 -8.77725 -6.85484 -5.70022 -2.97118 3.47328 3.51781 3.52628 4.64351 4.96693 5.00412 5.08959 5.47018 5.57627 5.67729 5.69673 5.78482 5.83907 5.85922 5.94087 6.00946 6.02927 6.06312 6.20732 6.22913 6.34536 6.36490 6.44899 6.45192 6.55756 6.61566 6.71791 6.84291 6.85011 7.02986 7.11948 7.29561 7.76184 8.49522 9.60121 10.20594 10.55315 11.52923 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.008047 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.592148 B = 3478.557940 C = 3694.527735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.067 0.933 4 C -0.097 4.097 5 C -0.065 4.065 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.105 4.105 9 C -0.137 4.137 10 C 0.185 3.815 11 H 0.042 0.958 12 N -0.723 5.723 13 C -0.233 4.233 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.287 1.287 21 H 0.046 0.954 22 H 0.038 0.962 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.383 0.617 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.935 -3.242 12.952 14.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.135 4.135 5 C -0.065 4.065 6 C -0.197 4.197 7 C -0.200 4.200 8 C -0.143 4.143 9 C -0.177 4.177 10 C 0.075 3.925 11 H 0.060 0.940 12 N -0.363 5.363 13 C -0.364 4.364 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.735 3.265 18 H -0.214 1.214 19 H -0.218 1.218 20 H -0.214 1.214 21 H 0.065 0.935 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.216 0.784 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.901 -3.357 12.792 14.104 hybrid contribution -0.106 -0.188 -0.976 1.000 sum 4.795 -3.545 11.815 13.235 Atomic orbital electron populations 1.21725 0.95400 1.01271 1.01186 1.21396 0.95619 0.99788 0.94842 0.91493 1.21596 0.93924 1.00404 0.97556 1.20534 0.95597 0.95514 0.94875 1.21866 1.00483 1.00043 0.97270 1.21955 1.00173 0.95944 1.01949 1.21585 0.99174 0.98937 0.94605 1.22282 0.99544 0.99995 0.95909 1.20204 0.90896 0.95241 0.86183 0.93965 1.42421 1.77871 1.10661 1.05383 1.19204 1.36012 0.93756 0.87448 0.91418 1.24703 1.02537 0.95951 0.97923 1.69647 1.51286 1.08642 1.28839 0.86311 0.77711 0.78607 0.83840 1.21400 1.21777 1.21414 0.93503 0.94338 0.91324 0.92374 0.92736 0.93140 0.92974 0.93112 0.93368 0.91438 0.93396 0.93117 0.92633 0.92481 0.92402 0.78380 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.04 37.16 0.34 -2.06 16 2 C -0.10 -1.66 2.02 -90.62 -0.18 -1.84 16 3 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 4 C -0.10 -1.37 4.01 -26.73 -0.11 -1.48 16 5 C -0.07 -0.87 0.77 -154.51 -0.12 -0.98 16 6 C -0.14 -1.56 8.47 37.16 0.31 -1.24 16 7 C -0.14 -1.87 7.78 37.16 0.29 -1.58 16 8 C -0.10 -1.55 4.73 -26.73 -0.13 -1.68 16 9 C -0.14 -2.53 5.23 -26.76 -0.14 -2.67 16 10 C 0.18 3.73 2.21 -67.96 -0.15 3.58 16 11 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 12 N -0.72 -18.21 4.43 -53.45 -0.24 -18.45 16 13 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.94 -28.50 13.06 55.49 0.72 -27.78 16 17 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.38 7.45 -51.93 -0.39 0.99 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.00 4.81 -51.93 -0.25 0.75 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.08 6.43 -51.93 -0.33 0.74 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.38 10.26 7.58 -40.82 -0.31 9.95 16 37 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 282.66 15.07 4.26 4.26 Total: -1.00 -29.13 282.66 -7.06 -36.19 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.65 Total: 5.26 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -0.13 Total: -17.17 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.49 Total: -46.22 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.13 -7.06 -36.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.195 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds