Wall clock time and date at job start Sun Mar 29 2020 21:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99675 * 2 1 3 5 5 C 1.52997 * 109.47131 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47127 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46991 * 60.00689 * 5 4 2 8 8 C 1.52997 * 109.47232 * 300.00126 * 5 4 2 9 9 C 1.52996 * 109.46975 * 60.00237 * 8 5 4 10 10 C 1.53000 * 109.47060 * 240.00128 * 2 1 3 11 11 H 1.08992 * 109.46645 * 299.99769 * 10 2 1 12 12 N 1.46496 * 109.47096 * 60.00079 * 10 2 1 13 13 C 1.36936 * 119.99518 * 204.99923 * 12 10 2 14 14 H 1.08001 * 120.00767 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99824 * 180.02562 * 13 12 10 16 16 N 1.31616 * 119.99954 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00205 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47151 * 59.99638 * 17 15 13 19 19 H 1.48496 * 109.47543 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46910 * 299.99797 * 17 15 13 21 21 H 1.08998 * 109.47533 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47502 * 300.00478 * 1 2 3 23 23 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 24 24 H 1.09001 * 109.46993 * 59.99869 * 4 2 1 25 25 H 1.09004 * 109.47298 * 300.00283 * 4 2 1 26 26 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 27 27 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 28 28 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 29 29 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 30 30 H 1.09002 * 109.46719 * 299.99711 * 7 5 4 31 31 H 1.08993 * 109.47839 * 59.99553 * 7 5 4 32 32 H 1.09000 * 109.47140 * 179.97438 * 8 5 4 33 33 H 1.09001 * 109.47375 * 299.99867 * 8 5 4 34 34 H 1.09001 * 109.47372 * 59.99628 * 9 8 5 35 35 H 1.08996 * 109.47261 * 180.02562 * 9 8 5 36 36 H 0.96992 * 120.00382 * 24.99943 * 12 10 2 37 37 H 0.97001 * 119.99945 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7217 1.2489 6 6 4.0800 -1.4435 2.4979 7 6 4.0804 0.7206 1.2487 8 6 4.0794 -1.4434 -0.0003 9 6 3.5695 -0.7221 -1.2495 10 6 2.0400 -0.7212 -1.2493 11 1 1.6766 -1.7488 -1.2492 12 7 1.5516 -0.0306 -2.4454 13 6 1.4209 -0.7138 -3.6249 14 1 1.6781 -1.7616 -3.6736 15 6 0.9587 -0.0593 -4.7585 16 7 0.6457 1.2177 -4.6994 17 14 0.7796 -0.9913 -6.3674 18 1 -0.1764 -2.1131 -6.1859 19 1 0.2708 -0.0729 -7.4176 20 1 2.1016 -1.5291 -6.7777 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -1.7488 1.2493 25 1 1.6766 -0.2073 2.1393 26 1 3.7169 -0.9297 3.3881 27 1 3.7162 -2.4710 2.4978 28 1 5.1700 -1.4435 2.4979 29 1 5.1704 0.7202 1.2489 30 1 3.7171 1.2344 0.3587 31 1 3.7175 1.2347 2.1386 32 1 5.1694 -1.4434 -0.0007 33 1 3.7158 -2.4709 0.0000 34 1 3.9331 0.3054 -1.2497 35 1 3.9320 -1.2365 -2.1394 36 1 1.3210 0.9105 -2.4018 37 1 0.3223 1.6750 -5.4914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307188699.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:01 Heat of formation + Delta-G solvation = -40.449465 kcal Electronic energy + Delta-G solvation = -14970.489538 eV Core-core repulsion = 12745.848503 eV Total energy + Delta-G solvation = -2224.641035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.64527 -36.58787 -34.34374 -32.91135 -31.13227 -28.12557 -27.39606 -26.91617 -24.73917 -22.62519 -21.15575 -19.60169 -18.76136 -16.88005 -15.95565 -15.80790 -15.47538 -15.31437 -14.70467 -14.54652 -13.86793 -13.53147 -13.28726 -13.12938 -12.85545 -12.82758 -12.62925 -12.56837 -12.46069 -12.21015 -12.03620 -11.82421 -11.75173 -11.47906 -11.16500 -10.88836 -10.80963 -10.64332 -8.93885 -7.91883 -5.18509 1.45376 1.48212 1.54271 2.57116 3.40651 3.76422 3.84651 3.90022 4.19280 4.26163 4.37929 4.50014 4.61593 4.65051 4.69836 4.81115 4.84187 4.96202 5.00830 5.02256 5.07645 5.17342 5.20174 5.23925 5.29362 5.33597 5.40185 5.46740 5.50006 5.58901 5.64678 5.69671 5.81083 6.31200 7.36392 8.15860 8.38873 9.31747 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047560 B = 0.008047 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.592148 B = 3478.557940 C = 3694.527735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.061 0.939 4 C -0.091 4.091 5 C -0.063 4.063 6 C -0.134 4.134 7 C -0.142 4.142 8 C -0.098 4.098 9 C -0.129 4.129 10 C 0.180 3.820 11 H 0.030 0.970 12 N -0.734 5.734 13 C -0.234 4.234 14 H 0.070 0.930 15 C -0.077 4.077 16 N -0.971 5.971 17 Si 0.968 3.032 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.280 1.280 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.031 0.969 36 H 0.371 0.629 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -4.297 14.805 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 H 0.079 0.921 4 C -0.129 4.129 5 C -0.063 4.063 6 C -0.191 4.191 7 C -0.199 4.199 8 C -0.137 4.137 9 C -0.169 4.169 10 C 0.072 3.928 11 H 0.049 0.951 12 N -0.373 5.373 13 C -0.366 4.366 14 H 0.088 0.912 15 C -0.269 4.269 16 N -0.622 5.622 17 Si 0.798 3.202 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.206 1.206 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.202 0.798 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.656 -4.451 14.682 16.351 hybrid contribution -0.320 0.132 -1.507 1.546 sum 5.337 -4.318 13.175 14.856 Atomic orbital electron populations 1.21668 0.95614 1.01108 1.00732 1.21319 0.95380 0.99477 0.94773 0.92074 1.21569 0.94635 1.00325 0.96339 1.20533 0.94874 0.95746 0.95170 1.21804 1.01076 1.00075 0.96155 1.21936 1.00806 0.95671 1.01509 1.21544 1.00027 0.98699 0.93380 1.22110 0.97942 0.99791 0.97070 1.20436 0.91991 0.94454 0.85952 0.95149 1.42608 1.78199 1.10205 1.06291 1.19556 1.34556 0.93956 0.88574 0.91227 1.25485 1.03304 0.96872 1.01245 1.69808 1.52921 1.10155 1.29332 0.85282 0.77856 0.77369 0.79719 1.20549 1.22141 1.20647 0.93475 0.91508 0.94998 0.92006 0.90564 0.91775 0.92464 0.92209 0.92432 0.93847 0.91845 0.91655 0.92265 0.93286 0.94980 0.79750 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.04 71.98 0.65 -3.91 16 2 C -0.09 -3.01 2.02 -10.80 -0.02 -3.04 16 3 H 0.06 2.13 6.43 -2.39 -0.02 2.11 16 4 C -0.09 -2.31 4.01 30.59 0.12 -2.19 16 5 C -0.06 -1.49 0.77 -52.18 -0.04 -1.53 16 6 C -0.13 -2.43 8.47 71.98 0.61 -1.82 16 7 C -0.14 -3.36 7.78 71.98 0.56 -2.80 16 8 C -0.10 -2.72 4.73 30.59 0.14 -2.58 16 9 C -0.13 -4.77 5.23 30.58 0.16 -4.61 16 10 C 0.18 7.34 2.21 44.98 0.10 7.43 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 N -0.73 -38.07 4.43 -323.03 -1.43 -39.50 16 13 C -0.23 -13.40 9.93 84.03 0.83 -12.56 16 14 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 15 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 16 N -0.97 -60.77 13.06 21.65 0.28 -60.48 16 17 Si 0.97 47.35 29.55 68.60 2.03 49.38 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.03 1.30 7.45 -2.39 -0.02 1.28 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.23 4.81 -2.39 -0.01 1.22 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.87 6.43 -2.39 -0.02 1.86 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.37 20.71 7.58 -92.71 -0.70 20.01 16 37 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -63.27 282.66 4.78 -58.49 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.31 Total: 23.78 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 3.59 Total: -31.67 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -1.15 Total: -99.98 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -63.27 4.78 -58.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188699.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.042 kcal (2) G-P(sol) polarization free energy of solvation -63.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds