Wall clock time and date at job start Sun Mar 29 2020 21:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47092 * 60.00174 * 5 4 2 7 7 C 1.52996 * 109.46975 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 9 9 C 1.52996 * 109.46891 * 60.00410 * 8 5 4 10 10 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 2 1 12 12 N 1.46500 * 109.47007 * 299.99872 * 10 2 1 13 13 C 1.36931 * 119.99971 * 154.99885 * 12 10 2 14 14 H 1.08005 * 120.00425 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00390 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99556 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00553 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00050 * 17 15 13 19 19 H 1.48500 * 109.47547 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46942 * 299.99859 * 17 15 13 21 21 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 23 23 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 25 25 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 26 26 H 1.09000 * 109.47312 * 59.99880 * 6 5 4 27 27 H 1.09004 * 109.46930 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47067 * 299.99853 * 6 5 4 29 29 H 1.09001 * 109.47372 * 59.99628 * 7 5 4 30 30 H 1.08996 * 109.47261 * 180.02562 * 7 5 4 31 31 H 1.09004 * 109.47368 * 299.99783 * 7 5 4 32 32 H 1.09004 * 109.47006 * 180.02562 * 8 5 4 33 33 H 1.08992 * 109.47056 * 300.00064 * 8 5 4 34 34 H 1.09004 * 109.47368 * 179.97438 * 9 8 5 35 35 H 1.09001 * 109.47372 * 59.99964 * 9 8 5 36 36 H 0.97004 * 120.00223 * 334.99863 * 12 10 2 37 37 H 0.96997 * 119.99679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0794 0.7222 1.2498 7 6 4.0799 -1.4421 2.4987 8 6 4.0804 -1.4416 0.0006 9 6 3.5705 -0.7205 -1.2487 10 6 2.0400 -0.7213 -1.2491 11 1 1.6767 -0.2076 -2.1392 12 7 1.5517 -2.1026 -1.2490 13 6 1.4210 -2.7827 -2.4302 14 1 1.6775 -2.3007 -3.3622 15 6 0.9578 -4.0912 -2.4302 16 7 0.6448 -4.6785 -1.2946 17 14 0.7802 -5.0193 -4.0416 18 1 2.1030 -5.1070 -4.7108 19 1 0.2700 -6.3874 -3.7713 20 1 -0.1743 -4.3010 -4.9238 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.6766 -0.2072 2.1393 25 1 1.6766 -1.7488 1.2495 26 1 3.7157 1.2359 2.1398 27 1 5.1694 0.7226 1.2505 28 1 3.7161 1.2359 0.3598 29 1 3.7169 -2.4699 2.4982 30 1 5.1699 -1.4414 2.4992 31 1 3.7162 -0.9288 3.3889 32 1 5.1705 -1.4416 0.0010 33 1 3.7175 -2.4693 0.0005 34 1 3.9345 -1.2339 -2.1387 35 1 3.9335 0.3073 -1.2487 36 1 1.3210 -2.5354 -0.4121 37 1 0.3208 -5.5927 -1.2946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307188700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:03 Heat of formation + Delta-G solvation = -20.309408 kcal Electronic energy + Delta-G solvation = -15257.389430 eV Core-core repulsion = 13033.621734 eV Total energy + Delta-G solvation = -2223.767697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.34221 -34.68966 -32.57085 -31.22686 -29.12018 -27.00188 -26.10026 -25.24387 -23.32571 -21.13688 -19.46999 -17.51514 -17.08057 -14.72858 -14.53723 -14.45790 -13.89089 -13.69924 -13.41274 -12.82608 -12.51748 -12.16811 -11.95740 -11.50659 -11.33785 -11.23644 -11.09394 -10.94988 -10.83047 -10.55992 -10.47509 -10.17195 -10.04413 -9.89074 -9.53644 -9.29034 -9.18923 -8.75853 -6.82817 -5.68839 -2.94965 3.47741 3.52460 3.53020 4.66339 5.13216 5.19445 5.24770 5.56190 5.62344 5.76248 5.81261 5.89612 5.96635 5.99464 6.07024 6.09057 6.12899 6.22193 6.26470 6.35195 6.42471 6.48271 6.52900 6.54472 6.64104 6.72066 6.83825 6.95264 7.05501 7.07859 7.21257 7.26726 7.77525 8.51214 9.62050 10.23188 10.58297 11.54104 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038303 B = 0.009535 C = 0.009087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.830244 B = 2935.722070 C = 3080.620261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.062 0.938 4 C -0.099 4.099 5 C -0.063 4.063 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.098 4.098 9 C -0.135 4.135 10 C 0.180 3.820 11 H 0.042 0.958 12 N -0.717 5.717 13 C -0.231 4.231 14 H 0.067 0.933 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.903 3.097 18 H -0.288 1.288 19 H -0.293 1.293 20 H -0.288 1.288 21 H 0.067 0.933 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.384 0.616 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.849 9.468 5.495 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.080 0.920 4 C -0.136 4.136 5 C -0.063 4.063 6 C -0.198 4.198 7 C -0.197 4.197 8 C -0.136 4.136 9 C -0.175 4.175 10 C 0.070 3.930 11 H 0.060 0.940 12 N -0.359 5.359 13 C -0.362 4.362 14 H 0.085 0.915 15 C -0.211 4.211 16 N -0.584 5.584 17 Si 0.735 3.265 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.215 1.215 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.220 0.780 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.823 9.395 5.324 11.827 hybrid contribution -0.114 -0.773 -0.658 1.022 sum 4.708 8.622 4.666 10.876 Atomic orbital electron populations 1.21735 0.95505 1.02783 0.99669 1.21379 0.95522 0.98527 0.96015 0.92015 1.21569 0.93932 1.01384 0.96745 1.20501 0.95621 0.94873 0.95304 1.21948 1.00025 0.96438 1.01352 1.21852 1.00208 1.00595 0.97020 1.21427 0.98064 1.00731 0.93347 1.22187 0.99546 0.98139 0.97647 1.20221 0.91070 0.87235 0.94497 0.94001 1.42450 1.77701 1.09015 1.06773 1.19208 1.35764 0.94596 0.86670 0.91508 1.24677 1.02667 0.97255 0.96537 1.69644 1.51394 1.13351 1.24028 0.86326 0.77660 0.79151 0.83407 1.21485 1.21852 1.21489 0.91350 0.94347 0.93481 0.93290 0.91173 0.93586 0.93533 0.92022 0.92520 0.93337 0.93398 0.93964 0.90687 0.92550 0.93811 0.78050 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.04 37.15 0.34 -2.07 16 2 C -0.10 -1.62 2.24 -90.62 -0.20 -1.83 16 3 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 4 C -0.10 -1.63 3.84 -26.73 -0.10 -1.73 16 5 C -0.06 -0.96 0.77 -154.51 -0.12 -1.08 16 6 C -0.14 -1.86 7.78 37.16 0.29 -1.57 16 7 C -0.14 -1.95 8.47 37.16 0.31 -1.64 16 8 C -0.10 -1.73 4.57 -26.73 -0.12 -1.85 16 9 C -0.13 -2.48 5.34 -26.71 -0.14 -2.62 16 10 C 0.18 3.61 2.55 -67.91 -0.17 3.44 16 11 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 12 N -0.72 -17.60 3.59 -53.40 -0.19 -17.79 16 13 C -0.23 -6.37 9.93 -15.06 -0.15 -6.52 16 14 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 16 N -0.94 -28.16 13.06 55.49 0.72 -27.44 16 17 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H 0.07 1.37 7.45 -51.93 -0.39 0.99 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.35 6.51 -51.93 -0.34 1.01 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.58 7.60 -51.93 -0.39 1.18 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.70 6.43 -51.93 -0.33 0.37 16 36 H 0.38 10.01 5.85 -40.82 -0.24 9.77 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -28.62 278.25 -6.93 -35.55 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.47 Total: 5.91 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -0.17 Total: -18.03 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.53 Total: -45.23 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.62 -6.93 -35.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.244 kcal (2) G-P(sol) polarization free energy of solvation -28.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds