Wall clock time and date at job start Sun Mar 29 2020 21:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99147 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47092 * 60.00174 * 5 4 2 7 7 C 1.52996 * 109.46975 * 180.02562 * 5 4 2 8 8 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 9 9 C 1.52996 * 109.46891 * 60.00410 * 8 5 4 10 10 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 11 11 H 1.09002 * 109.47153 * 59.99783 * 10 2 1 12 12 N 1.46500 * 109.47007 * 299.99872 * 10 2 1 13 13 C 1.36931 * 119.99971 * 154.99885 * 12 10 2 14 14 H 1.08005 * 120.00425 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00390 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99556 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00553 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00050 * 17 15 13 19 19 H 1.48500 * 109.47547 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46942 * 299.99859 * 17 15 13 21 21 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 23 23 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 25 25 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 26 26 H 1.09000 * 109.47312 * 59.99880 * 6 5 4 27 27 H 1.09004 * 109.46930 * 179.97438 * 6 5 4 28 28 H 1.09002 * 109.47067 * 299.99853 * 6 5 4 29 29 H 1.09001 * 109.47372 * 59.99628 * 7 5 4 30 30 H 1.08996 * 109.47261 * 180.02562 * 7 5 4 31 31 H 1.09004 * 109.47368 * 299.99783 * 7 5 4 32 32 H 1.09004 * 109.47006 * 180.02562 * 8 5 4 33 33 H 1.08992 * 109.47056 * 300.00064 * 8 5 4 34 34 H 1.09004 * 109.47368 * 179.97438 * 9 8 5 35 35 H 1.09001 * 109.47372 * 59.99964 * 9 8 5 36 36 H 0.97004 * 120.00223 * 334.99863 * 12 10 2 37 37 H 0.96997 * 119.99679 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5699 -0.7205 1.2497 6 6 4.0794 0.7222 1.2498 7 6 4.0799 -1.4421 2.4987 8 6 4.0804 -1.4416 0.0006 9 6 3.5705 -0.7205 -1.2487 10 6 2.0400 -0.7213 -1.2491 11 1 1.6767 -0.2076 -2.1392 12 7 1.5517 -2.1026 -1.2490 13 6 1.4210 -2.7827 -2.4302 14 1 1.6775 -2.3007 -3.3622 15 6 0.9578 -4.0912 -2.4302 16 7 0.6448 -4.6785 -1.2946 17 14 0.7802 -5.0193 -4.0416 18 1 2.1030 -5.1070 -4.7108 19 1 0.2700 -6.3874 -3.7713 20 1 -0.1743 -4.3010 -4.9238 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 1.6766 -0.2072 2.1393 25 1 1.6766 -1.7488 1.2495 26 1 3.7157 1.2359 2.1398 27 1 5.1694 0.7226 1.2505 28 1 3.7161 1.2359 0.3598 29 1 3.7169 -2.4699 2.4982 30 1 5.1699 -1.4414 2.4992 31 1 3.7162 -0.9288 3.3889 32 1 5.1705 -1.4416 0.0010 33 1 3.7175 -2.4693 0.0005 34 1 3.9345 -1.2339 -2.1387 35 1 3.9335 0.3073 -1.2487 36 1 1.3210 -2.5354 -0.4121 37 1 0.3208 -5.5927 -1.2946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307188700.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:03 Heat of formation + Delta-G solvation = -36.095326 kcal Electronic energy + Delta-G solvation = -15258.073959 eV Core-core repulsion = 13033.621734 eV Total energy + Delta-G solvation = -2224.452225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75256 -36.32968 -34.33291 -32.84757 -30.94888 -28.07852 -27.41231 -26.87366 -25.28114 -22.60938 -20.87510 -19.33656 -18.75840 -16.50155 -16.21934 -15.80252 -15.52060 -15.22380 -14.75531 -14.36519 -14.29770 -13.51532 -13.17498 -12.98935 -12.83813 -12.73580 -12.58871 -12.56982 -12.40793 -12.21068 -12.01800 -11.85114 -11.76739 -11.42703 -11.07148 -10.86147 -10.65593 -10.61467 -8.87876 -7.88542 -5.13093 1.45734 1.48103 1.53968 2.59115 3.43984 3.83336 3.90122 3.95578 4.16449 4.30923 4.43413 4.54439 4.58527 4.71039 4.74862 4.80923 4.87915 4.93983 4.98434 5.08593 5.10534 5.18933 5.22890 5.26011 5.31257 5.34310 5.39960 5.50936 5.56280 5.64182 5.67233 5.75110 5.85316 6.34863 7.40858 8.22974 8.45705 9.35039 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038303 B = 0.009535 C = 0.009087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.830244 B = 2935.722070 C = 3080.620261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.093 0.907 4 C -0.095 4.095 5 C -0.060 4.060 6 C -0.135 4.135 7 C -0.137 4.137 8 C -0.094 4.094 9 C -0.128 4.128 10 C 0.171 3.829 11 H 0.033 0.967 12 N -0.724 5.724 13 C -0.229 4.229 14 H 0.069 0.931 15 C -0.078 4.078 16 N -0.970 5.970 17 Si 0.965 3.035 18 H -0.282 1.282 19 H -0.298 1.298 20 H -0.281 1.281 21 H 0.029 0.971 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.374 0.626 37 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 11.708 5.949 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.111 0.889 4 C -0.133 4.133 5 C -0.060 4.060 6 C -0.192 4.192 7 C -0.194 4.194 8 C -0.132 4.132 9 C -0.168 4.168 10 C 0.062 3.938 11 H 0.051 0.949 12 N -0.366 5.366 13 C -0.361 4.361 14 H 0.087 0.913 15 C -0.270 4.270 16 N -0.622 5.622 17 Si 0.795 3.205 18 H -0.208 1.208 19 H -0.224 1.224 20 H -0.207 1.207 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.208 0.792 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.789 11.681 5.763 14.254 hybrid contribution -0.387 -1.403 -0.793 1.658 sum 5.402 10.279 4.970 12.631 Atomic orbital electron populations 1.21685 0.95788 1.00689 1.01129 1.21350 0.95252 0.99608 0.94485 0.88850 1.21534 0.95026 0.99340 0.97401 1.20485 0.94579 0.96551 0.94410 1.21896 1.00852 0.94185 1.02296 1.21828 1.01033 0.99412 0.97174 1.21363 0.98846 0.98447 0.94534 1.22082 0.97924 0.99847 0.96972 1.20493 0.92237 0.85099 0.95945 0.94935 1.42593 1.77850 1.10706 1.05408 1.19564 1.33947 0.94829 0.87773 0.91319 1.25420 1.03716 0.98393 0.99491 1.69809 1.53185 1.13234 1.25940 0.85324 0.77722 0.77492 0.79930 1.20845 1.22402 1.20714 0.95157 0.91524 0.93376 0.90929 0.94927 0.91703 0.92311 0.91976 0.94695 0.92019 0.91448 0.92474 0.95175 0.95062 0.90452 0.79217 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.04 71.98 0.65 -3.87 16 2 C -0.09 -2.84 2.24 -10.79 -0.02 -2.86 16 3 H 0.09 2.49 6.43 -2.39 -0.02 2.47 16 4 C -0.10 -3.00 3.84 30.60 0.12 -2.89 16 5 C -0.06 -1.70 0.77 -52.18 -0.04 -1.74 16 6 C -0.14 -2.97 7.78 71.98 0.56 -2.41 16 7 C -0.14 -3.56 8.47 71.98 0.61 -2.95 16 8 C -0.09 -3.25 4.57 30.59 0.14 -3.11 16 9 C -0.13 -4.58 5.34 30.61 0.16 -4.42 16 10 C 0.17 6.78 2.55 45.01 0.11 6.90 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 N -0.72 -36.61 3.59 -322.87 -1.16 -37.76 16 13 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 14 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 15 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 16 N -0.97 -60.51 13.06 21.65 0.28 -60.22 16 17 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 20 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 21 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 22 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.03 1.27 6.51 -2.39 -0.02 1.26 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.06 1.36 4.81 -2.39 -0.01 1.35 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.03 1.30 7.60 -2.39 -0.02 1.28 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 2.25 6.43 -2.39 -0.02 2.24 16 36 H 0.37 20.41 5.85 -92.71 -0.54 19.87 16 37 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -63.16 278.25 5.22 -57.94 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.48 Total: 24.12 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.59 Total: -33.56 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -0.88 Total: -97.99 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -63.16 5.22 -57.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307188700.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.842 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds